miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9360 5' -55.6 NC_002512.2 + 193361 0.66 0.954011
Target:  5'- cGUGGAGGAGG--AGUucGUCGCcGCGGg -3'
miRNA:   3'- -UAUCUCCUCCcgUCGu-CAGCGuUGUC- -5'
9360 5' -55.6 NC_002512.2 + 97831 0.66 0.954011
Target:  5'- aGUAGAGGgcggcgcgGGGGaAGCGGagGCGACGa -3'
miRNA:   3'- -UAUCUCC--------UCCCgUCGUCagCGUUGUc -5'
9360 5' -55.6 NC_002512.2 + 227469 0.66 0.954011
Target:  5'- -gAGAGGccgGGGGCGGCcGGcCGCGAgGa -3'
miRNA:   3'- uaUCUCC---UCCCGUCG-UCaGCGUUgUc -5'
9360 5' -55.6 NC_002512.2 + 119098 0.66 0.94571
Target:  5'- -aGGAGGugcGGGCGGCcucGG-CGCAGCu- -3'
miRNA:   3'- uaUCUCCu--CCCGUCG---UCaGCGUUGuc -5'
9360 5' -55.6 NC_002512.2 + 216487 0.66 0.94571
Target:  5'- -cAG-GGAGGcGCAGCGcGUCagGUAGCGGa -3'
miRNA:   3'- uaUCuCCUCC-CGUCGU-CAG--CGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 206107 0.66 0.941212
Target:  5'- -gGGAGGuGGGaCAcCAGggucaggCGCAGCGGg -3'
miRNA:   3'- uaUCUCCuCCC-GUcGUCa------GCGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 221285 0.66 0.941212
Target:  5'- cGUGGAGGGGGGggaGGCcggGGUCgGCGgggaGCGGg -3'
miRNA:   3'- -UAUCUCCUCCCg--UCG---UCAG-CGU----UGUC- -5'
9360 5' -55.6 NC_002512.2 + 150311 0.66 0.94075
Target:  5'- -cGGAGGAGcgagaccGGCGGCgAGgacgcCGCGGCGGu -3'
miRNA:   3'- uaUCUCCUC-------CCGUCG-UCa----GCGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 153400 0.66 0.939817
Target:  5'- cGUGGAGcgcGGCGGCGGUCgagguggcggaaugGCGGCAGg -3'
miRNA:   3'- -UAUCUCcucCCGUCGUCAG--------------CGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 146718 0.66 0.936481
Target:  5'- --cGAcGGcGGGGCGGCGGcCGCGGCc- -3'
miRNA:   3'- uauCU-CC-UCCCGUCGUCaGCGUUGuc -5'
9360 5' -55.6 NC_002512.2 + 219946 0.66 0.933528
Target:  5'- -cGGGGGAGGGUGGaucccccgGGUCGCGcgcucaaaaaagacuGCGGg -3'
miRNA:   3'- uaUCUCCUCCCGUCg-------UCAGCGU---------------UGUC- -5'
9360 5' -55.6 NC_002512.2 + 192681 0.66 0.931513
Target:  5'- cUGGGGGAGGuGUGGCGG-CGCGcCGa -3'
miRNA:   3'- uAUCUCCUCC-CGUCGUCaGCGUuGUc -5'
9360 5' -55.6 NC_002512.2 + 156466 0.66 0.931513
Target:  5'- -cGGGGGAcucggGGGCGGCGGgCuCGGCGGg -3'
miRNA:   3'- uaUCUCCU-----CCCGUCGUCaGcGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 153195 0.67 0.926309
Target:  5'- --uGGGGAGGGCGGCAccCGgGACc- -3'
miRNA:   3'- uauCUCCUCCCGUCGUcaGCgUUGuc -5'
9360 5' -55.6 NC_002512.2 + 181587 0.67 0.926309
Target:  5'- -cGGcGGcaGGGGCGGCGGgucCGCGACGu -3'
miRNA:   3'- uaUCuCC--UCCCGUCGUCa--GCGUUGUc -5'
9360 5' -55.6 NC_002512.2 + 217847 0.67 0.926309
Target:  5'- -cAGAGGc-GGCAGCGGUCugcccgGCGugGGg -3'
miRNA:   3'- uaUCUCCucCCGUCGUCAG------CGUugUC- -5'
9360 5' -55.6 NC_002512.2 + 96211 0.67 0.926309
Target:  5'- --cGAGGucGGCcacGGCGGcCGCGGCGGc -3'
miRNA:   3'- uauCUCCucCCG---UCGUCaGCGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 105654 0.67 0.920867
Target:  5'- --cGAGGuAGGGCG--AGcCGCAGCAGa -3'
miRNA:   3'- uauCUCC-UCCCGUcgUCaGCGUUGUC- -5'
9360 5' -55.6 NC_002512.2 + 196419 0.67 0.915189
Target:  5'- --cGGGGGGcGGCGGCcgGGUCGgGAgAGg -3'
miRNA:   3'- uauCUCCUC-CCGUCG--UCAGCgUUgUC- -5'
9360 5' -55.6 NC_002512.2 + 187648 0.67 0.909276
Target:  5'- cAUGGAGGGcGGCGGCcacggucacGGUCacgGCGGCGGg -3'
miRNA:   3'- -UAUCUCCUcCCGUCG---------UCAG---CGUUGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.