miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9361 5' -56.4 NC_002512.2 + 110447 0.66 0.965641
Target:  5'- aGGCGGaggacgcgcaccaggUCCCcgcGGUCcacgcUCCCGAGcAGCGg -3'
miRNA:   3'- -CCGCU---------------AGGGa--CCAGc----AGGGCUU-UCGC- -5'
9361 5' -56.4 NC_002512.2 + 219833 0.66 0.961129
Target:  5'- gGGuCGGUCggggGGUCcggCCCGggGGCGg -3'
miRNA:   3'- -CC-GCUAGgga-CCAGca-GGGCuuUCGC- -5'
9361 5' -56.4 NC_002512.2 + 168759 0.66 0.957666
Target:  5'- uGCGGaagaCCUGGUCGUUgCCGuacGGCGa -3'
miRNA:   3'- cCGCUag--GGACCAGCAG-GGCuu-UCGC- -5'
9361 5' -56.4 NC_002512.2 + 223043 0.66 0.955489
Target:  5'- cGGCGAgguccgggaggugcCCCUGGUCGcCaCCGu-GGCc -3'
miRNA:   3'- -CCGCUa-------------GGGACCAGCaG-GGCuuUCGc -5'
9361 5' -56.4 NC_002512.2 + 101306 0.66 0.953997
Target:  5'- cGGCc-UCUCgcagGGUCGgccCCCGGAGGCc -3'
miRNA:   3'- -CCGcuAGGGa---CCAGCa--GGGCUUUCGc -5'
9361 5' -56.4 NC_002512.2 + 187817 0.66 0.953618
Target:  5'- -cCGG-CCCUGGUCGUCCaGAccguccgGAGCc -3'
miRNA:   3'- ccGCUaGGGACCAGCAGGgCU-------UUCGc -5'
9361 5' -56.4 NC_002512.2 + 159004 0.66 0.950119
Target:  5'- cGGCGG-CCCcGG-CGUCCgCGccGGGCGg -3'
miRNA:   3'- -CCGCUaGGGaCCaGCAGG-GCu-UUCGC- -5'
9361 5' -56.4 NC_002512.2 + 143525 0.66 0.950119
Target:  5'- gGGCGcgCCUggcGGccUCGUCgCCGucGGCGg -3'
miRNA:   3'- -CCGCuaGGGa--CC--AGCAG-GGCuuUCGC- -5'
9361 5' -56.4 NC_002512.2 + 189938 0.67 0.946029
Target:  5'- cGGCGAcugcUCCCccucGGUCuUCCCGGaccucuucGAGCu -3'
miRNA:   3'- -CCGCU----AGGGa---CCAGcAGGGCU--------UUCGc -5'
9361 5' -56.4 NC_002512.2 + 167713 0.67 0.946029
Target:  5'- uGGCGGUCUaccGGUC-UCUCGucGAGCGg -3'
miRNA:   3'- -CCGCUAGGga-CCAGcAGGGCu-UUCGC- -5'
9361 5' -56.4 NC_002512.2 + 171593 0.67 0.945609
Target:  5'- cGGCGggCUCUccuacaacaucgaGGUCGUcgccuucgggCCCGAcAGCGa -3'
miRNA:   3'- -CCGCuaGGGA-------------CCAGCA----------GGGCUuUCGC- -5'
9361 5' -56.4 NC_002512.2 + 218474 0.67 0.937204
Target:  5'- cGCGGucaucuccucgUCCCgcgGGUCGUCCgCGuccGAGCc -3'
miRNA:   3'- cCGCU-----------AGGGa--CCAGCAGG-GCu--UUCGc -5'
9361 5' -56.4 NC_002512.2 + 108769 0.67 0.93674
Target:  5'- gGGCGAUCCggCU-GUCGUCaCCGAAcucuacgGGCc -3'
miRNA:   3'- -CCGCUAGG--GAcCAGCAG-GGCUU-------UCGc -5'
9361 5' -56.4 NC_002512.2 + 122287 0.67 0.932466
Target:  5'- uGGUGcugCuCCUGGUCGUCgUGAccaagaAGGCGa -3'
miRNA:   3'- -CCGCua-G-GGACCAGCAGgGCU------UUCGC- -5'
9361 5' -56.4 NC_002512.2 + 180147 0.67 0.932466
Target:  5'- gGGCGGUCCaggacGGccucCGUCCCGAGcaGGUa -3'
miRNA:   3'- -CCGCUAGGga---CCa---GCAGGGCUU--UCGc -5'
9361 5' -56.4 NC_002512.2 + 223194 0.67 0.927508
Target:  5'- gGGCcg-CCCgacgGGgacggCGUCCCGGAGcGCGu -3'
miRNA:   3'- -CCGcuaGGGa---CCa----GCAGGGCUUU-CGC- -5'
9361 5' -56.4 NC_002512.2 + 126985 0.67 0.927508
Target:  5'- cGCGGUCCUcucccagcgcgGGUCGUaCCCGGgucccccguAGGCGu -3'
miRNA:   3'- cCGCUAGGGa----------CCAGCA-GGGCU---------UUCGC- -5'
9361 5' -56.4 NC_002512.2 + 205089 0.67 0.927508
Target:  5'- cGGCGAUCCguccucgGGgggCGcgCCCGGacccGAGCGg -3'
miRNA:   3'- -CCGCUAGGga-----CCa--GCa-GGGCU----UUCGC- -5'
9361 5' -56.4 NC_002512.2 + 223115 0.67 0.924428
Target:  5'- gGGgGAUCCgCgGGUCGaguccgucaucgucuUCCCGAuccAGCGc -3'
miRNA:   3'- -CCgCUAGG-GaCCAGC---------------AGGGCUu--UCGC- -5'
9361 5' -56.4 NC_002512.2 + 141702 0.67 0.922332
Target:  5'- -aCGAcUCCCUccUCGUCCCGGAcGCGa -3'
miRNA:   3'- ccGCU-AGGGAccAGCAGGGCUUuCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.