miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9362 5' -57.3 NC_002512.2 + 200077 0.66 0.929959
Target:  5'- -cGGGAAGC-CGAaGCCcGCGcCCGUc -3'
miRNA:   3'- caCUCUUCGuGCUcCGGuCGCuGGCG- -5'
9362 5' -57.3 NC_002512.2 + 127912 0.66 0.929959
Target:  5'- -gGAucGGcCACGAGcccGCCGGCGGgcCCGCg -3'
miRNA:   3'- caCUcuUC-GUGCUC---CGGUCGCU--GGCG- -5'
9362 5' -57.3 NC_002512.2 + 160768 0.66 0.929959
Target:  5'- --cGGAGGUcccggaGCGGGGCCGGCGcaGCaGCa -3'
miRNA:   3'- cacUCUUCG------UGCUCCGGUCGC--UGgCG- -5'
9362 5' -57.3 NC_002512.2 + 168106 0.66 0.929959
Target:  5'- cGUGcGGGAGCAggguaggagaGGGGCC--CGGCCGCg -3'
miRNA:   3'- -CAC-UCUUCGUg---------CUCCGGucGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 224147 0.66 0.929959
Target:  5'- -cGGGAGGCggacgcgugagGCGGGGCgGG-GGCgCGCg -3'
miRNA:   3'- caCUCUUCG-----------UGCUCCGgUCgCUG-GCG- -5'
9362 5' -57.3 NC_002512.2 + 110487 0.66 0.929959
Target:  5'- -cGAGcagcGGCACGcGGCCcugcAGCagGGCCGCc -3'
miRNA:   3'- caCUCu---UCGUGCuCCGG----UCG--CUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 128205 0.66 0.929959
Target:  5'- cGUGAGGAaaccGC-CGAcguagaucGGcCCGGCGuCCGCg -3'
miRNA:   3'- -CACUCUU----CGuGCU--------CC-GGUCGCuGGCG- -5'
9362 5' -57.3 NC_002512.2 + 141956 0.66 0.929959
Target:  5'- aUGAGAGugACGAGGUaCAGCGuguagucgguCCGCa -3'
miRNA:   3'- cACUCUUcgUGCUCCG-GUCGCu---------GGCG- -5'
9362 5' -57.3 NC_002512.2 + 190874 0.66 0.929959
Target:  5'- -cGGGggGCuuuccccgcgucGCGGGGCgaGGCGaACCGg -3'
miRNA:   3'- caCUCuuCG------------UGCUCCGg-UCGC-UGGCg -5'
9362 5' -57.3 NC_002512.2 + 226911 0.66 0.926911
Target:  5'- -cGGGAGGCcaAgGAGGCCcgcgagaaGGCGcucaagcucgccaagGCCGCg -3'
miRNA:   3'- caCUCUUCG--UgCUCCGG--------UCGC---------------UGGCG- -5'
9362 5' -57.3 NC_002512.2 + 110091 0.66 0.924835
Target:  5'- -----uGGCGCaGAGGCCGGUGcaGCUGCu -3'
miRNA:   3'- cacucuUCGUG-CUCCGGUCGC--UGGCG- -5'
9362 5' -57.3 NC_002512.2 + 119551 0.66 0.924835
Target:  5'- -cGGGGAGC--GGGGaCCgGGCGgACCGCg -3'
miRNA:   3'- caCUCUUCGugCUCC-GG-UCGC-UGGCG- -5'
9362 5' -57.3 NC_002512.2 + 214950 0.66 0.924835
Target:  5'- cGUGgccgcGGAcGCACGGGGuCCGGauccaGACCGa -3'
miRNA:   3'- -CAC-----UCUuCGUGCUCC-GGUCg----CUGGCg -5'
9362 5' -57.3 NC_002512.2 + 222358 0.66 0.924835
Target:  5'- -gGAGcGGCACGGGGCCgccuuccccGGCGGgCu- -3'
miRNA:   3'- caCUCuUCGUGCUCCGG---------UCGCUgGcg -5'
9362 5' -57.3 NC_002512.2 + 229013 0.66 0.924835
Target:  5'- -cGGGAGGCGagaGAGGagAGCgGACgGCg -3'
miRNA:   3'- caCUCUUCGUg--CUCCggUCG-CUGgCG- -5'
9362 5' -57.3 NC_002512.2 + 132018 0.66 0.92431
Target:  5'- -gGGGAccucGGCgGCGAcgucgucGGCCAGgGACCGg -3'
miRNA:   3'- caCUCU----UCG-UGCU-------CCGGUCgCUGGCg -5'
9362 5' -57.3 NC_002512.2 + 127723 0.66 0.92431
Target:  5'- -gGGGAAGCgaucgacgacccaGCGcGGUC-GCGGCCGUa -3'
miRNA:   3'- caCUCUUCG-------------UGCuCCGGuCGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 197844 0.66 0.919487
Target:  5'- -cGAGGggcGGCGgGAGGCCcucuucaacCGACUGCg -3'
miRNA:   3'- caCUCU---UCGUgCUCCGGuc-------GCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 145088 0.66 0.919487
Target:  5'- -cGAGuucCGCGAGGCgucGCGGCUGCc -3'
miRNA:   3'- caCUCuucGUGCUCCGgu-CGCUGGCG- -5'
9362 5' -57.3 NC_002512.2 + 135195 0.66 0.919487
Target:  5'- -cGAGcugucGCACGAGGgCAGCuGCgCGCc -3'
miRNA:   3'- caCUCuu---CGUGCUCCgGUCGcUG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.