miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9370 5' -57 NC_002512.2 + 215187 0.66 0.947448
Target:  5'- -gGGAGCGgacgcGGGUCuACCUCUUCGucgGCGg -3'
miRNA:   3'- ggCCUCGU-----UCCAG-UGGGGGAGU---UGCa -5'
9370 5' -57 NC_002512.2 + 211886 0.66 0.947448
Target:  5'- cCUGGAGC-GGGUCACCUUC-CGgggcugccGCGUc -3'
miRNA:   3'- -GGCCUCGuUCCAGUGGGGGaGU--------UGCA- -5'
9370 5' -57 NC_002512.2 + 106257 0.66 0.947448
Target:  5'- cCCGGgugagGGUGAGGUCccACCUCCg-GACGUg -3'
miRNA:   3'- -GGCC-----UCGUUCCAG--UGGGGGagUUGCA- -5'
9370 5' -57 NC_002512.2 + 187125 0.66 0.947448
Target:  5'- aCCaGGGGCAGGGgCugCCCCUg----- -3'
miRNA:   3'- -GG-CCUCGUUCCaGugGGGGAguugca -5'
9370 5' -57 NC_002512.2 + 127762 0.66 0.943205
Target:  5'- aCGGc-CAGGGUC-CCCCUcCGACGg -3'
miRNA:   3'- gGCCucGUUCCAGuGGGGGaGUUGCa -5'
9370 5' -57 NC_002512.2 + 127566 0.66 0.943205
Target:  5'- aCCGGAGCcGGccCAgCCgCUCGGCGa -3'
miRNA:   3'- -GGCCUCGuUCcaGUgGGgGAGUUGCa -5'
9370 5' -57 NC_002512.2 + 190947 0.66 0.938745
Target:  5'- cCCGGGcGCAcgcGGG-CGCCCgCCgCGGCGg -3'
miRNA:   3'- -GGCCU-CGU---UCCaGUGGG-GGaGUUGCa -5'
9370 5' -57 NC_002512.2 + 200096 0.66 0.934067
Target:  5'- cCCGucGCGGGGUCGCCgggguaCUUCAGCa- -3'
miRNA:   3'- -GGCcuCGUUCCAGUGGg-----GGAGUUGca -5'
9370 5' -57 NC_002512.2 + 123062 0.67 0.924049
Target:  5'- gCGGAagaggaggucGCGGcGGccUCGCCCCCUCccGACGUc -3'
miRNA:   3'- gGCCU----------CGUU-CC--AGUGGGGGAG--UUGCA- -5'
9370 5' -57 NC_002512.2 + 150382 0.67 0.924049
Target:  5'- cUCGGAGUGAGaggcGUC-CCCCCUCccCGa -3'
miRNA:   3'- -GGCCUCGUUC----CAGuGGGGGAGuuGCa -5'
9370 5' -57 NC_002512.2 + 210677 0.67 0.924049
Target:  5'- cCUGGuccaagcgcaacGGCAAGGcgccgcgggagaUCACCCgcuuCCUCAGCGUc -3'
miRNA:   3'- -GGCC------------UCGUUCC------------AGUGGG----GGAGUUGCA- -5'
9370 5' -57 NC_002512.2 + 98127 0.67 0.91871
Target:  5'- gCCGGGGCGcuGGUCgucgcggccGCCCgCCcCGGCGg -3'
miRNA:   3'- -GGCCUCGUu-CCAG---------UGGG-GGaGUUGCa -5'
9370 5' -57 NC_002512.2 + 191814 0.67 0.918164
Target:  5'- aCCGGGcacugacgcgcGCGGGGUCcuugcgcccucccACCCCUcCGGCGUc -3'
miRNA:   3'- -GGCCU-----------CGUUCCAG-------------UGGGGGaGUUGCA- -5'
9370 5' -57 NC_002512.2 + 216301 0.67 0.913151
Target:  5'- cCCGGGGacguGGGUCACCUgCaUCuGCGg -3'
miRNA:   3'- -GGCCUCgu--UCCAGUGGGgG-AGuUGCa -5'
9370 5' -57 NC_002512.2 + 220131 0.67 0.907373
Target:  5'- gCGGGGCGgcGGGUCcggcuccgccGCCCCCaagGGCGUc -3'
miRNA:   3'- gGCCUCGU--UCCAG----------UGGGGGag-UUGCA- -5'
9370 5' -57 NC_002512.2 + 108433 0.67 0.907373
Target:  5'- cCCGGGGCcgggggccggGGGGUCcCuCCCCgggCGGCGc -3'
miRNA:   3'- -GGCCUCG----------UUCCAGuG-GGGGa--GUUGCa -5'
9370 5' -57 NC_002512.2 + 128136 0.67 0.907373
Target:  5'- aCGGAGCGcccGGGcCACCaCCUC-GCGa -3'
miRNA:   3'- gGCCUCGU---UCCaGUGGgGGAGuUGCa -5'
9370 5' -57 NC_002512.2 + 131914 0.67 0.907373
Target:  5'- cCCGGGGCGuaccGG-CGCCCCUgcugCAcgggaGCGUa -3'
miRNA:   3'- -GGCCUCGUu---CCaGUGGGGGa---GU-----UGCA- -5'
9370 5' -57 NC_002512.2 + 197660 0.67 0.907373
Target:  5'- uCUGGcccGaCGAGGUggaCGCCCuCCUCAACGg -3'
miRNA:   3'- -GGCCu--C-GUUCCA---GUGGG-GGAGUUGCa -5'
9370 5' -57 NC_002512.2 + 189186 0.67 0.901379
Target:  5'- gCCGGcaAGCAcccAGGUCGCCgCgggcggcaugCUCGACGUc -3'
miRNA:   3'- -GGCC--UCGU---UCCAGUGGgG----------GAGUUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.