miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9370 5' -57 NC_002512.2 + 165217 0.68 0.853605
Target:  5'- aCCGGcccGGCGAGG--ACCUCCgCGACGUg -3'
miRNA:   3'- -GGCC---UCGUUCCagUGGGGGaGUUGCA- -5'
9370 5' -57 NC_002512.2 + 159060 0.7 0.757575
Target:  5'- cCCGGGGCGAGGcggacgacgCGCCCCUcccccaaccugcgCAACGg -3'
miRNA:   3'- -GGCCUCGUUCCa--------GUGGGGGa------------GUUGCa -5'
9370 5' -57 NC_002512.2 + 157071 0.71 0.723944
Target:  5'- cCCGGGGUccGGGGUCGCCggcgCCCaCGGCGg -3'
miRNA:   3'- -GGCCUCG--UUCCAGUGG----GGGaGUUGCa -5'
9370 5' -57 NC_002512.2 + 157040 0.71 0.742769
Target:  5'- cCCGGAGCGAGG--ACCCCggCAagGCGg -3'
miRNA:   3'- -GGCCUCGUUCCagUGGGGgaGU--UGCa -5'
9370 5' -57 NC_002512.2 + 156932 0.67 0.901379
Target:  5'- -aGGAGCccacGGUCGCCaCCCUgGugGc -3'
miRNA:   3'- ggCCUCGuu--CCAGUGG-GGGAgUugCa -5'
9370 5' -57 NC_002512.2 + 150681 0.7 0.791631
Target:  5'- gCGGGcGCGGcGGUCGCCCCgacggaccguuggcuCUCGGCGg -3'
miRNA:   3'- gGCCU-CGUU-CCAGUGGGG---------------GAGUUGCa -5'
9370 5' -57 NC_002512.2 + 150382 0.67 0.924049
Target:  5'- cUCGGAGUGAGaggcGUC-CCCCCUCccCGa -3'
miRNA:   3'- -GGCCUCGUUC----CAGuGGGGGAGuuGCa -5'
9370 5' -57 NC_002512.2 + 147444 0.67 0.901379
Target:  5'- uCgGGAGCGGGaccgaCGCCCCCUCGuccccuccgccGCGg -3'
miRNA:   3'- -GgCCUCGUUCca---GUGGGGGAGU-----------UGCa -5'
9370 5' -57 NC_002512.2 + 146179 0.7 0.770317
Target:  5'- gCCGcGcGGCAcGGUCGCCCUgggCUCGACGa -3'
miRNA:   3'- -GGC-C-UCGUuCCAGUGGGG---GAGUUGCa -5'
9370 5' -57 NC_002512.2 + 144570 0.68 0.856595
Target:  5'- aCCGGcgaccuacgucgagcGGCAGGcGUCgAUCCCCUCGcACGa -3'
miRNA:   3'- -GGCC---------------UCGUUC-CAG-UGGGGGAGU-UGCa -5'
9370 5' -57 NC_002512.2 + 140166 0.71 0.723944
Target:  5'- uCCGGuccCAAGGUCACCCgCCacccguUCGGCGa -3'
miRNA:   3'- -GGCCuc-GUUCCAGUGGG-GG------AGUUGCa -5'
9370 5' -57 NC_002512.2 + 131914 0.67 0.907373
Target:  5'- cCCGGGGCGuaccGG-CGCCCCUgcugCAcgggaGCGUa -3'
miRNA:   3'- -GGCCUCGUu---CCaGUGGGGGa---GU-----UGCA- -5'
9370 5' -57 NC_002512.2 + 128412 0.75 0.529732
Target:  5'- cCCGGuGGCGGGGUCGCCggagCCCUCcucGCGg -3'
miRNA:   3'- -GGCC-UCGUUCCAGUGG----GGGAGu--UGCa -5'
9370 5' -57 NC_002512.2 + 128136 0.67 0.907373
Target:  5'- aCGGAGCGcccGGGcCACCaCCUC-GCGa -3'
miRNA:   3'- gGCCUCGU---UCCaGUGGgGGAGuUGCa -5'
9370 5' -57 NC_002512.2 + 127762 0.66 0.943205
Target:  5'- aCGGc-CAGGGUC-CCCCUcCGACGg -3'
miRNA:   3'- gGCCucGUUCCAGuGGGGGaGUUGCa -5'
9370 5' -57 NC_002512.2 + 127566 0.66 0.943205
Target:  5'- aCCGGAGCcGGccCAgCCgCUCGGCGa -3'
miRNA:   3'- -GGCCUCGuUCcaGUgGGgGAGUUGCa -5'
9370 5' -57 NC_002512.2 + 123062 0.67 0.924049
Target:  5'- gCGGAagaggaggucGCGGcGGccUCGCCCCCUCccGACGUc -3'
miRNA:   3'- gGCCU----------CGUU-CC--AGUGGGGGAG--UUGCA- -5'
9370 5' -57 NC_002512.2 + 111809 0.7 0.770317
Target:  5'- gCCGGcGCcGGaGcCGCCCCCUCcGCGg -3'
miRNA:   3'- -GGCCuCGuUC-CaGUGGGGGAGuUGCa -5'
9370 5' -57 NC_002512.2 + 108433 0.67 0.907373
Target:  5'- cCCGGGGCcgggggccggGGGGUCcCuCCCCgggCGGCGc -3'
miRNA:   3'- -GGCCUCG----------UUCCAGuG-GGGGa--GUUGCa -5'
9370 5' -57 NC_002512.2 + 106257 0.66 0.947448
Target:  5'- cCCGGgugagGGUGAGGUCccACCUCCg-GACGUg -3'
miRNA:   3'- -GGCC-----UCGUUCCAG--UGGGGGagUUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.