miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9371 5' -56.9 NC_002512.2 + 216209 0.66 0.938018
Target:  5'- gCCGcGGCCGUCGccucguCCGGGAGCuggagccgcGGCGa -3'
miRNA:   3'- -GGUuCCGGUAGCc-----GGUUCUCG---------UCGCa -5'
9371 5' -56.9 NC_002512.2 + 124319 0.66 0.938018
Target:  5'- aUCGGGGCCG-CGGCgGAcGuGCuGCGg -3'
miRNA:   3'- -GGUUCCGGUaGCCGgUU-CuCGuCGCa -5'
9371 5' -56.9 NC_002512.2 + 152741 0.66 0.938018
Target:  5'- -aGAGGCguUcCGGCCGGGAGCccGGuCGa -3'
miRNA:   3'- ggUUCCGguA-GCCGGUUCUCG--UC-GCa -5'
9371 5' -56.9 NC_002512.2 + 167498 0.66 0.93324
Target:  5'- aCGAGGCCGU-GuCCGAGGGCGccauGCGg -3'
miRNA:   3'- gGUUCCGGUAgCcGGUUCUCGU----CGCa -5'
9371 5' -56.9 NC_002512.2 + 164507 0.66 0.93324
Target:  5'- cCCAGGGgaAgcgCGGuaacgugaCCAAGGGCGGCGa -3'
miRNA:   3'- -GGUUCCggUa--GCC--------GGUUCUCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 204132 0.66 0.931762
Target:  5'- uCCAGGGCCucuacgaccuggcgGccuaucucUCGGCUAAGgacGGCAGCa- -3'
miRNA:   3'- -GGUUCCGG--------------U--------AGCCGGUUC---UCGUCGca -5'
9371 5' -56.9 NC_002512.2 + 74597 0.66 0.928236
Target:  5'- gCCGGGGCCcuccGUCGGCUc-GAGCcGCc- -3'
miRNA:   3'- -GGUUCCGG----UAGCCGGuuCUCGuCGca -5'
9371 5' -56.9 NC_002512.2 + 132031 0.66 0.927723
Target:  5'- gCGAcGUCGUCGGCCAGGgaccggaGGguGCGc -3'
miRNA:   3'- gGUUcCGGUAGCCGGUUC-------UCguCGCa -5'
9371 5' -56.9 NC_002512.2 + 221426 0.66 0.927207
Target:  5'- uCCGAcGGCCGccaugcggaccgCGGCCGGGGcGCGGuCGUc -3'
miRNA:   3'- -GGUU-CCGGUa-----------GCCGGUUCU-CGUC-GCA- -5'
9371 5' -56.9 NC_002512.2 + 210168 0.66 0.923005
Target:  5'- aCAgcGGGCCGUUcauCCAGGAGCAcuGCGUc -3'
miRNA:   3'- gGU--UCCGGUAGcc-GGUUCUCGU--CGCA- -5'
9371 5' -56.9 NC_002512.2 + 139853 0.66 0.923005
Target:  5'- gCGAGGCCA--GGCCAcacaGGA-CGGCGa -3'
miRNA:   3'- gGUUCCGGUagCCGGU----UCUcGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 9131 0.66 0.923005
Target:  5'- aCCGuGGUC-UCGGUCAccGAGCAGCu- -3'
miRNA:   3'- -GGUuCCGGuAGCCGGUu-CUCGUCGca -5'
9371 5' -56.9 NC_002512.2 + 227218 0.66 0.923005
Target:  5'- aCCAggAGGCgG-CGGaCCGGGAggcGCGGCGg -3'
miRNA:   3'- -GGU--UCCGgUaGCC-GGUUCU---CGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 32910 0.66 0.917548
Target:  5'- aCUggGGCCGauUCgaguaccuggaGGCCGucGAGCAGCa- -3'
miRNA:   3'- -GGuuCCGGU--AG-----------CCGGUu-CUCGUCGca -5'
9371 5' -56.9 NC_002512.2 + 109709 0.66 0.917548
Target:  5'- -gGAGGCCGUgcugaucaCGGaCGAGAGCcGCGa -3'
miRNA:   3'- ggUUCCGGUA--------GCCgGUUCUCGuCGCa -5'
9371 5' -56.9 NC_002512.2 + 143731 0.66 0.917548
Target:  5'- gCAGGGCCucggaggCGGCC----GCGGCGUc -3'
miRNA:   3'- gGUUCCGGua-----GCCGGuucuCGUCGCA- -5'
9371 5' -56.9 NC_002512.2 + 166185 0.66 0.917548
Target:  5'- aCAAGGagaucCCcgUGGCCuucuuGGGCGGCGa -3'
miRNA:   3'- gGUUCC-----GGuaGCCGGuu---CUCGUCGCa -5'
9371 5' -56.9 NC_002512.2 + 139162 0.66 0.911865
Target:  5'- uUCGAGGCCGUCuuGCCGcacucuAGGGcCAGCa- -3'
miRNA:   3'- -GGUUCCGGUAGc-CGGU------UCUC-GUCGca -5'
9371 5' -56.9 NC_002512.2 + 114189 0.66 0.911865
Target:  5'- gCCGgcgucGGGCCcggCGGCCAuGAGgaGGCGg -3'
miRNA:   3'- -GGU-----UCCGGua-GCCGGUuCUCg-UCGCa -5'
9371 5' -56.9 NC_002512.2 + 98810 0.66 0.911865
Target:  5'- cCCGGcGGCCGgagcgacggaUCGGCCuccGGcGCGGCGc -3'
miRNA:   3'- -GGUU-CCGGU----------AGCCGGu--UCuCGUCGCa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.