miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9372 3' -53.2 NC_002512.2 + 208404 0.66 0.995882
Target:  5'- cCCGcCUGCGGAUgcucuaCGGgcgccgcucCCGGCg -3'
miRNA:   3'- -GGCaGGCGCCUA------GCCauuaua---GGCCG- -5'
9372 3' -53.2 NC_002512.2 + 88988 0.66 0.995632
Target:  5'- cCCGUCgucgacccggagCGCGGGgacgUCGGgcAgcgcgAUCCGaGCg -3'
miRNA:   3'- -GGCAG------------GCGCCU----AGCCauUa----UAGGC-CG- -5'
9372 3' -53.2 NC_002512.2 + 196010 0.66 0.995632
Target:  5'- uCCGUgCGCGGAcgcgaaGGggGggaCCGGCu -3'
miRNA:   3'- -GGCAgGCGCCUag----CCauUauaGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 221445 0.66 0.995632
Target:  5'- aCCGcggCCGgGGcgCGGUcGUccgaCCGGCc -3'
miRNA:   3'- -GGCa--GGCgCCuaGCCAuUAua--GGCCG- -5'
9372 3' -53.2 NC_002512.2 + 93782 0.66 0.995632
Target:  5'- -gGUCgggaGCGGAUCGGgugacgGGcGUCCGaGCc -3'
miRNA:   3'- ggCAGg---CGCCUAGCCa-----UUaUAGGC-CG- -5'
9372 3' -53.2 NC_002512.2 + 99715 0.66 0.994952
Target:  5'- cUCGUCCGCGccgucgCGGg-----CCGGCc -3'
miRNA:   3'- -GGCAGGCGCcua---GCCauuauaGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 169103 0.66 0.994952
Target:  5'- cUCGUCCucGCGGggCGuucg-GUCCGGUc -3'
miRNA:   3'- -GGCAGG--CGCCuaGCcauuaUAGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 188764 0.66 0.994952
Target:  5'- gUGUCCaaGGG-CGGU----UCCGGCg -3'
miRNA:   3'- gGCAGGcgCCUaGCCAuuauAGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 207876 0.66 0.994952
Target:  5'- -aGUCCGgGGA-CGGcu---UCUGGCg -3'
miRNA:   3'- ggCAGGCgCCUaGCCauuauAGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 145682 0.66 0.994952
Target:  5'- cCUGUCCGCGGA-CGaGUGGcugcgccgCUGGUc -3'
miRNA:   3'- -GGCAGGCGCCUaGC-CAUUaua-----GGCCG- -5'
9372 3' -53.2 NC_002512.2 + 173291 0.66 0.994952
Target:  5'- aCCGUCCGCuGGAg-GGccGUcaUCGGCu -3'
miRNA:   3'- -GGCAGGCG-CCUagCCauUAuaGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 167230 0.66 0.993336
Target:  5'- gUCGgcuUCCGCgGGAUCGGgcgagagGUCCuGGUc -3'
miRNA:   3'- -GGC---AGGCG-CCUAGCCauua---UAGG-CCG- -5'
9372 3' -53.2 NC_002512.2 + 36501 0.66 0.993336
Target:  5'- aCG-CUGCGGc-CGGUuauGUGUCCGuGCu -3'
miRNA:   3'- gGCaGGCGCCuaGCCAu--UAUAGGC-CG- -5'
9372 3' -53.2 NC_002512.2 + 184652 0.66 0.993336
Target:  5'- -aGUCCGCGGGcgccgCGccGAaAUCCGGUc -3'
miRNA:   3'- ggCAGGCGCCUa----GCcaUUaUAGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 224354 0.66 0.993154
Target:  5'- gCCGgggUCGCGGG-CGGgagaccucgGUCCGGg -3'
miRNA:   3'- -GGCa--GGCGCCUaGCCauua-----UAGGCCg -5'
9372 3' -53.2 NC_002512.2 + 206997 0.66 0.992778
Target:  5'- cCCGUggcCCGCGGGgucagcaUGGUGgcccaguugugcagcGUgccGUCCGGCa -3'
miRNA:   3'- -GGCA---GGCGCCUa------GCCAU---------------UA---UAGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 198468 0.66 0.992386
Target:  5'- gCUGUCCGUGuagggguuGAUCGcGUAGUAgcggaUCUGGUc -3'
miRNA:   3'- -GGCAGGCGC--------CUAGC-CAUUAU-----AGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 186707 0.66 0.992386
Target:  5'- uUCGUCUgcgGCGGGUUGGgcgAGgagUCGGCc -3'
miRNA:   3'- -GGCAGG---CGCCUAGCCa--UUauaGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 179753 0.66 0.992386
Target:  5'- cUCGUCCGgGGucUCGcaGAUGUacaCGGCg -3'
miRNA:   3'- -GGCAGGCgCCu-AGCcaUUAUAg--GCCG- -5'
9372 3' -53.2 NC_002512.2 + 102955 0.66 0.992386
Target:  5'- -aGUCCGCGGAgaacucgUGGUc----CCGGUa -3'
miRNA:   3'- ggCAGGCGCCUa------GCCAuuauaGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.