Results 1 - 20 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9372 | 3' | -53.2 | NC_002512.2 | + | 208404 | 0.66 | 0.995882 |
Target: 5'- cCCGcCUGCGGAUgcucuaCGGgcgccgcucCCGGCg -3' miRNA: 3'- -GGCaGGCGCCUA------GCCauuaua---GGCCG- -5' |
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9372 | 3' | -53.2 | NC_002512.2 | + | 88988 | 0.66 | 0.995632 |
Target: 5'- cCCGUCgucgacccggagCGCGGGgacgUCGGgcAgcgcgAUCCGaGCg -3' miRNA: 3'- -GGCAG------------GCGCCU----AGCCauUa----UAGGC-CG- -5' |
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9372 | 3' | -53.2 | NC_002512.2 | + | 196010 | 0.66 | 0.995632 |
Target: 5'- uCCGUgCGCGGAcgcgaaGGggGggaCCGGCu -3' miRNA: 3'- -GGCAgGCGCCUag----CCauUauaGGCCG- -5' |
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9372 | 3' | -53.2 | NC_002512.2 | + | 221445 | 0.66 | 0.995632 |
Target: 5'- aCCGcggCCGgGGcgCGGUcGUccgaCCGGCc -3' miRNA: 3'- -GGCa--GGCgCCuaGCCAuUAua--GGCCG- -5' |
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9372 | 3' | -53.2 | NC_002512.2 | + | 93782 | 0.66 | 0.995632 |
Target: 5'- -gGUCgggaGCGGAUCGGgugacgGGcGUCCGaGCc -3' miRNA: 3'- ggCAGg---CGCCUAGCCa-----UUaUAGGC-CG- -5' |
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9372 | 3' | -53.2 | NC_002512.2 | + | 99715 | 0.66 | 0.994952 |
Target: 5'- cUCGUCCGCGccgucgCGGg-----CCGGCc -3' miRNA: 3'- -GGCAGGCGCcua---GCCauuauaGGCCG- -5' |
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9372 | 3' | -53.2 | NC_002512.2 | + | 169103 | 0.66 | 0.994952 |
Target: 5'- cUCGUCCucGCGGggCGuucg-GUCCGGUc -3' miRNA: 3'- -GGCAGG--CGCCuaGCcauuaUAGGCCG- -5' |
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9372 | 3' | -53.2 | NC_002512.2 | + | 188764 | 0.66 | 0.994952 |
Target: 5'- gUGUCCaaGGG-CGGU----UCCGGCg -3' miRNA: 3'- gGCAGGcgCCUaGCCAuuauAGGCCG- -5' |
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9372 | 3' | -53.2 | NC_002512.2 | + | 207876 | 0.66 | 0.994952 |
Target: 5'- -aGUCCGgGGA-CGGcu---UCUGGCg -3' miRNA: 3'- ggCAGGCgCCUaGCCauuauAGGCCG- -5' |
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9372 | 3' | -53.2 | NC_002512.2 | + | 145682 | 0.66 | 0.994952 |
Target: 5'- cCUGUCCGCGGA-CGaGUGGcugcgccgCUGGUc -3' miRNA: 3'- -GGCAGGCGCCUaGC-CAUUaua-----GGCCG- -5' |
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9372 | 3' | -53.2 | NC_002512.2 | + | 173291 | 0.66 | 0.994952 |
Target: 5'- aCCGUCCGCuGGAg-GGccGUcaUCGGCu -3' miRNA: 3'- -GGCAGGCG-CCUagCCauUAuaGGCCG- -5' |
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9372 | 3' | -53.2 | NC_002512.2 | + | 167230 | 0.66 | 0.993336 |
Target: 5'- gUCGgcuUCCGCgGGAUCGGgcgagagGUCCuGGUc -3' miRNA: 3'- -GGC---AGGCG-CCUAGCCauua---UAGG-CCG- -5' |
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9372 | 3' | -53.2 | NC_002512.2 | + | 36501 | 0.66 | 0.993336 |
Target: 5'- aCG-CUGCGGc-CGGUuauGUGUCCGuGCu -3' miRNA: 3'- gGCaGGCGCCuaGCCAu--UAUAGGC-CG- -5' |
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9372 | 3' | -53.2 | NC_002512.2 | + | 184652 | 0.66 | 0.993336 |
Target: 5'- -aGUCCGCGGGcgccgCGccGAaAUCCGGUc -3' miRNA: 3'- ggCAGGCGCCUa----GCcaUUaUAGGCCG- -5' |
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9372 | 3' | -53.2 | NC_002512.2 | + | 224354 | 0.66 | 0.993154 |
Target: 5'- gCCGgggUCGCGGG-CGGgagaccucgGUCCGGg -3' miRNA: 3'- -GGCa--GGCGCCUaGCCauua-----UAGGCCg -5' |
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9372 | 3' | -53.2 | NC_002512.2 | + | 206997 | 0.66 | 0.992778 |
Target: 5'- cCCGUggcCCGCGGGgucagcaUGGUGgcccaguugugcagcGUgccGUCCGGCa -3' miRNA: 3'- -GGCA---GGCGCCUa------GCCAU---------------UA---UAGGCCG- -5' |
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9372 | 3' | -53.2 | NC_002512.2 | + | 152704 | 0.66 | 0.992386 |
Target: 5'- gCGUCCcCGG-UCGGg---GUgCGGCg -3' miRNA: 3'- gGCAGGcGCCuAGCCauuaUAgGCCG- -5' |
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9372 | 3' | -53.2 | NC_002512.2 | + | 198468 | 0.66 | 0.992386 |
Target: 5'- gCUGUCCGUGuagggguuGAUCGcGUAGUAgcggaUCUGGUc -3' miRNA: 3'- -GGCAGGCGC--------CUAGC-CAUUAU-----AGGCCG- -5' |
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9372 | 3' | -53.2 | NC_002512.2 | + | 186707 | 0.66 | 0.992386 |
Target: 5'- uUCGUCUgcgGCGGGUUGGgcgAGgagUCGGCc -3' miRNA: 3'- -GGCAGG---CGCCUAGCCa--UUauaGGCCG- -5' |
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9372 | 3' | -53.2 | NC_002512.2 | + | 179753 | 0.66 | 0.992386 |
Target: 5'- cUCGUCCGgGGucUCGcaGAUGUacaCGGCg -3' miRNA: 3'- -GGCAGGCgCCu-AGCcaUUAUAg--GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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