miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9377 3' -47.9 NC_002512.2 + 156969 0.66 0.999979
Target:  5'- cGCCGACgucgGCaUCCuGGGCAAcuucGGCCGCc -3'
miRNA:   3'- -UGGCUGa---UG-AGG-CUUGUUu---UUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 75920 0.66 0.999979
Target:  5'- cGCCGGCgccgCCGGACcccgAAGAACC-CGa -3'
miRNA:   3'- -UGGCUGaugaGGCUUG----UUUUUGGuGC- -5'
9377 3' -47.9 NC_002512.2 + 128697 0.66 0.999979
Target:  5'- cGCCGGCg--UCuCGGACAAcaccauccuGAACCGCa -3'
miRNA:   3'- -UGGCUGaugAG-GCUUGUU---------UUUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 136867 0.66 0.999979
Target:  5'- cACCaGCUGCagCUGAACAAGAAgaccgUCGCGg -3'
miRNA:   3'- -UGGcUGAUGa-GGCUUGUUUUU-----GGUGC- -5'
9377 3' -47.9 NC_002512.2 + 66537 0.66 0.999979
Target:  5'- uCCGACcACguaUCCGAA-GAGGACCACc -3'
miRNA:   3'- uGGCUGaUG---AGGCUUgUUUUUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 115228 0.66 0.999979
Target:  5'- gACCGAgaGCaUCCuGGACGAcccGACCACc -3'
miRNA:   3'- -UGGCUgaUG-AGG-CUUGUUu--UUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 117832 0.66 0.999979
Target:  5'- gACCGACg--UCCuGGACAcgGAGGCCAUc -3'
miRNA:   3'- -UGGCUGaugAGG-CUUGU--UUUUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 134825 0.66 0.999971
Target:  5'- cCCaGCUGCUgCCGAcgGCGGAGGCCuACu -3'
miRNA:   3'- uGGcUGAUGA-GGCU--UGUUUUUGG-UGc -5'
9377 3' -47.9 NC_002512.2 + 224965 0.66 0.999971
Target:  5'- cGCCGuCUACccgCUGGGCGGcgGCgGCGg -3'
miRNA:   3'- -UGGCuGAUGa--GGCUUGUUuuUGgUGC- -5'
9377 3' -47.9 NC_002512.2 + 94563 0.66 0.999971
Target:  5'- gGCgCGGCUGacgCCGAccuCGGGGACCGCc -3'
miRNA:   3'- -UG-GCUGAUga-GGCUu--GUUUUUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 122398 0.66 0.999971
Target:  5'- gACCG-CUGCgggCCGGucgcggcgACGAGAugaacaucGCCACGg -3'
miRNA:   3'- -UGGCuGAUGa--GGCU--------UGUUUU--------UGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 106155 0.66 0.999971
Target:  5'- cCCGACcccGCaggUCCGAGCAcagguccacccGGAACCGCu -3'
miRNA:   3'- uGGCUGa--UG---AGGCUUGU-----------UUUUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 137914 0.66 0.999971
Target:  5'- gACgCGGCc-CUCCGGACGu--GCCGCu -3'
miRNA:   3'- -UG-GCUGauGAGGCUUGUuuuUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 130940 0.66 0.999961
Target:  5'- cACCGACUgaGCUCgaGGCGGAcGACCGCc -3'
miRNA:   3'- -UGGCUGA--UGAGgcUUGUUU-UUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 74749 0.66 0.999961
Target:  5'- cACCGGCUugUuccCCGGACGAc--CCAgGa -3'
miRNA:   3'- -UGGCUGAugA---GGCUUGUUuuuGGUgC- -5'
9377 3' -47.9 NC_002512.2 + 149400 0.66 0.999961
Target:  5'- uCCGGCUcCUCgaCGGGCcgcgaGGGGACCGCGg -3'
miRNA:   3'- uGGCUGAuGAG--GCUUG-----UUUUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 176079 0.66 0.999961
Target:  5'- cGCCGACacCUCgGAGCGcAGcGCCugGa -3'
miRNA:   3'- -UGGCUGauGAGgCUUGU-UUuUGGugC- -5'
9377 3' -47.9 NC_002512.2 + 189962 0.66 0.999961
Target:  5'- cCCGGaccuCUUCGAGCugcGGGACCGCGu -3'
miRNA:   3'- uGGCUgau-GAGGCUUGu--UUUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 111838 0.66 0.999961
Target:  5'- gUCGA--GC-CCGGGCAcgGGCCACGg -3'
miRNA:   3'- uGGCUgaUGaGGCUUGUuuUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 111599 0.66 0.999961
Target:  5'- cCCGGauCUucCUCCGGACGAGGGCgGCc -3'
miRNA:   3'- uGGCU--GAu-GAGGCUUGUUUUUGgUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.