Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9378 | 3' | -55.1 | NC_002512.2 | + | 179810 | 0.73 | 0.719363 |
Target: 5'- cGggUCGAacagguaGGUCGGUC-CCCUCUCCg -3' miRNA: 3'- uCuuAGUUc------CCGGCUAGcGGGAGAGG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 177554 | 0.68 | 0.910997 |
Target: 5'- cAGGAUCGucugguucGGGGCCG-UCGCCaggaugcgcgccagCgUCUCCg -3' miRNA: 3'- -UCUUAGU--------UCCCGGCuAGCGG--------------G-AGAGG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 176017 | 0.66 | 0.962682 |
Target: 5'- -uGGUCccuGGGGaacggaCGGUCcCCCUCUCCu -3' miRNA: 3'- ucUUAGu--UCCCg-----GCUAGcGGGAGAGG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 174324 | 0.72 | 0.73763 |
Target: 5'- uGggUCAgcaggcgGGGGuCCGccgCGCCCUCgUCCg -3' miRNA: 3'- uCuuAGU-------UCCC-GGCua-GCGGGAG-AGG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 172486 | 0.66 | 0.968941 |
Target: 5'- ---uUCAGGGGCucaaCGAccugcaucaguUCGUCUUCUCCc -3' miRNA: 3'- ucuuAGUUCCCG----GCU-----------AGCGGGAGAGG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 171738 | 0.74 | 0.680134 |
Target: 5'- gGGAcGUCGagcucGGGGCCc-UCGCCCUCUCg -3' miRNA: 3'- -UCU-UAGU-----UCCCGGcuAGCGGGAGAGg -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 165726 | 0.66 | 0.976871 |
Target: 5'- gGGggUCGGGGGCgcAUCGCuucaCCUUcgCCg -3' miRNA: 3'- -UCuuAGUUCCCGgcUAGCG----GGAGa-GG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 164262 | 0.71 | 0.811248 |
Target: 5'- gGGGGcCGucGGGUCGAUCGCCUcgggcuucgUCUCCu -3' miRNA: 3'- -UCUUaGUu-CCCGGCUAGCGGG---------AGAGG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 154922 | 0.66 | 0.968941 |
Target: 5'- gGGAAaCGuGGGCgGAcCGCUCUCgUCCc -3' miRNA: 3'- -UCUUaGUuCCCGgCUaGCGGGAG-AGG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 148673 | 0.67 | 0.959243 |
Target: 5'- cGAucCAGcGGGCCG-UgGCCCUCgucgCCg -3' miRNA: 3'- uCUuaGUU-CCCGGCuAgCGGGAGa---GG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 143156 | 0.74 | 0.670212 |
Target: 5'- -aGAUCGAGGuCCGGUuggcCGCCCUCUCg -3' miRNA: 3'- ucUUAGUUCCcGGCUA----GCGGGAGAGg -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 135137 | 0.66 | 0.971773 |
Target: 5'- ----cCGAGGGCCGGgcCGCCCUg--- -3' miRNA: 3'- ucuuaGUUCCCGGCUa-GCGGGAgagg -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 135033 | 0.69 | 0.887832 |
Target: 5'- cAGGAUCGGGGGCCcGUCugacgcguacaGCCC-CUgCCu -3' miRNA: 3'- -UCUUAGUUCCCGGcUAG-----------CGGGaGA-GG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 127644 | 0.7 | 0.866883 |
Target: 5'- aGGGAUCGGGucgcucggacGGCCGGUCGagggCCgCUCCg -3' miRNA: 3'- -UCUUAGUUC----------CCGGCUAGCg---GGaGAGG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 118571 | 0.7 | 0.851904 |
Target: 5'- gGGAgcGUCGaaAGGGagccgCGAUCggcgGCCCUCUCCc -3' miRNA: 3'- -UCU--UAGU--UCCCg----GCUAG----CGGGAGAGG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 117885 | 0.68 | 0.92385 |
Target: 5'- cGGAcgcCGGGGGCCcGUCGCUg-CUCCa -3' miRNA: 3'- -UCUua-GUUCCCGGcUAGCGGgaGAGG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 113387 | 0.66 | 0.962682 |
Target: 5'- uGGAcCAGGGcGuuGcgCGCgCUCUCCc -3' miRNA: 3'- uCUUaGUUCC-CggCuaGCGgGAGAGG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 111722 | 0.68 | 0.938806 |
Target: 5'- cGGAGUCuccggcGGGCaCGGUCGCCaugucgcggUUCCg -3' miRNA: 3'- -UCUUAGuu----CCCG-GCUAGCGGga-------GAGG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 108435 | 0.69 | 0.900729 |
Target: 5'- cGGGGcCGGGGGCCGGgggGUCC-CUCCc -3' miRNA: 3'- -UCUUaGUUCCCGGCUag-CGGGaGAGG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 102563 | 0.66 | 0.976633 |
Target: 5'- cGGcGUCGAuGGCCGAcuccagggucUCGCgcacgcguuuccuCCUCUCCu -3' miRNA: 3'- -UCuUAGUUcCCGGCU----------AGCG-------------GGAGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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