miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9379 5' -54.2 NC_002512.2 + 126834 0.66 0.98745
Target:  5'- -cGUCGUCGcgcucGUCgcgGUCGUCGCCGUCGu -3'
miRNA:   3'- gcCGGCGGU-----UAG---UAGUAGUGGCAGCu -5'
9379 5' -54.2 NC_002512.2 + 87778 0.66 0.98745
Target:  5'- cCGGCCGCCGAcggGUCggUACCGgguccgcguUCGGu -3'
miRNA:   3'- -GCCGGCGGUUag-UAGuaGUGGC---------AGCU- -5'
9379 5' -54.2 NC_002512.2 + 222189 0.66 0.98745
Target:  5'- gGGCCGCgGccggCGUCGUCcguuucuUCGUCGGg -3'
miRNA:   3'- gCCGGCGgUua--GUAGUAGu------GGCAGCU- -5'
9379 5' -54.2 NC_002512.2 + 208714 0.66 0.98745
Target:  5'- gGGCuCGCCGAcCAgaUCGggagCGCCGcCGAc -3'
miRNA:   3'- gCCG-GCGGUUaGU--AGUa---GUGGCaGCU- -5'
9379 5' -54.2 NC_002512.2 + 179489 0.66 0.985884
Target:  5'- uCGGCgGC--GUCGUCGcCAUCGUCGu -3'
miRNA:   3'- -GCCGgCGguUAGUAGUaGUGGCAGCu -5'
9379 5' -54.2 NC_002512.2 + 103408 0.66 0.985884
Target:  5'- gGGCCaCgAAcUCGUCGaagaCGCCGUCGAa -3'
miRNA:   3'- gCCGGcGgUU-AGUAGUa---GUGGCAGCU- -5'
9379 5' -54.2 NC_002512.2 + 155135 0.66 0.984876
Target:  5'- gGGCCGCCGgguccccgaaaacagGUCGUCGgucUCGCuCGcUCGc -3'
miRNA:   3'- gCCGGCGGU---------------UAGUAGU---AGUG-GC-AGCu -5'
9379 5' -54.2 NC_002512.2 + 99612 0.66 0.984173
Target:  5'- gGGCC-CCGcgC-UCGUCGCgGUCGu -3'
miRNA:   3'- gCCGGcGGUuaGuAGUAGUGgCAGCu -5'
9379 5' -54.2 NC_002512.2 + 192695 0.66 0.984173
Target:  5'- gCGGCgCGCCGAggcCGUCuUCuacuucuccgccGCCGUCGu -3'
miRNA:   3'- -GCCG-GCGGUUa--GUAGuAG------------UGGCAGCu -5'
9379 5' -54.2 NC_002512.2 + 88938 0.66 0.984173
Target:  5'- cCGaGCCGCCccccuUCcgccUCGUCGCCGUCn- -3'
miRNA:   3'- -GC-CGGCGGuu---AGu---AGUAGUGGCAGcu -5'
9379 5' -54.2 NC_002512.2 + 150717 0.66 0.984173
Target:  5'- uCGGCgGCCGAcCGUUggacuUC-CCGUCGGc -3'
miRNA:   3'- -GCCGgCGGUUaGUAGu----AGuGGCAGCU- -5'
9379 5' -54.2 NC_002512.2 + 189689 0.66 0.984173
Target:  5'- cCGGCgGCCc-UCGUCGUCGaCGUCc- -3'
miRNA:   3'- -GCCGgCGGuuAGUAGUAGUgGCAGcu -5'
9379 5' -54.2 NC_002512.2 + 223686 0.66 0.982309
Target:  5'- aGGgCGCCGAcaacggCAUCGUCcugGCCGgCGAc -3'
miRNA:   3'- gCCgGCGGUUa-----GUAGUAG---UGGCaGCU- -5'
9379 5' -54.2 NC_002512.2 + 106636 0.66 0.982309
Target:  5'- gCGG-CGCCGGUCGUCGagcUCGaagaaGUCGAg -3'
miRNA:   3'- -GCCgGCGGUUAGUAGU---AGUgg---CAGCU- -5'
9379 5' -54.2 NC_002512.2 + 166035 0.66 0.982309
Target:  5'- gCGGCCGUUccggGGUCAUCAaggUCuucugcgcgggcACCGUCGu -3'
miRNA:   3'- -GCCGGCGG----UUAGUAGU---AG------------UGGCAGCu -5'
9379 5' -54.2 NC_002512.2 + 174833 0.66 0.982309
Target:  5'- -uGUCGCuCGAUCGUCucUC-CCGUCGGu -3'
miRNA:   3'- gcCGGCG-GUUAGUAGu-AGuGGCAGCU- -5'
9379 5' -54.2 NC_002512.2 + 184676 0.66 0.982309
Target:  5'- cCGGUCGgCGGcCGUCcgCGCCGcCGGu -3'
miRNA:   3'- -GCCGGCgGUUaGUAGuaGUGGCaGCU- -5'
9379 5' -54.2 NC_002512.2 + 202142 0.66 0.980284
Target:  5'- uCGGCCGCCGccgcggggcggGUgGUCGUUcCCGUgGu -3'
miRNA:   3'- -GCCGGCGGU-----------UAgUAGUAGuGGCAgCu -5'
9379 5' -54.2 NC_002512.2 + 202089 0.66 0.980284
Target:  5'- gGGgCGCCGGUCAccUCGUCcgACCG-CGu -3'
miRNA:   3'- gCCgGCGGUUAGU--AGUAG--UGGCaGCu -5'
9379 5' -54.2 NC_002512.2 + 196956 0.66 0.980284
Target:  5'- uGGCCGCCAAcCAgggcagCAUCuaccCCGUgucCGAc -3'
miRNA:   3'- gCCGGCGGUUaGUa-----GUAGu---GGCA---GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.