miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9381 3' -55.1 NC_002512.2 + 182679 0.66 0.977972
Target:  5'- -uGAUGcGGUUCUGG-GGCCGgGCGUc -3'
miRNA:   3'- cuCUAUaCCAGGGCUaCUGGCgCGCG- -5'
9381 3' -55.1 NC_002512.2 + 226799 0.66 0.977972
Target:  5'- ----cGUGGUCUCGGccgccgccgUGGCCGC-CGCc -3'
miRNA:   3'- cucuaUACCAGGGCU---------ACUGGCGcGCG- -5'
9381 3' -55.1 NC_002512.2 + 169973 0.66 0.977744
Target:  5'- aGGGUcgGGgcgaacgUCCCGcucGCCGUGCGCc -3'
miRNA:   3'- cUCUAuaCC-------AGGGCuacUGGCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 110678 0.66 0.975606
Target:  5'- ------cGGUCCUGGUGcUCGCGCaGCc -3'
miRNA:   3'- cucuauaCCAGGGCUACuGGCGCG-CG- -5'
9381 3' -55.1 NC_002512.2 + 150731 0.66 0.975606
Target:  5'- -----uUGGacuUCCCGucgGcCCGCGCGCg -3'
miRNA:   3'- cucuauACC---AGGGCua-CuGGCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 105054 0.66 0.975606
Target:  5'- ------aGGUCCCGGUGuCCgGCaCGCa -3'
miRNA:   3'- cucuauaCCAGGGCUACuGG-CGcGCG- -5'
9381 3' -55.1 NC_002512.2 + 207080 0.66 0.973059
Target:  5'- cGAGAaGUGGaUCCCGcccuuGUGGuaGCGgGCg -3'
miRNA:   3'- -CUCUaUACC-AGGGC-----UACUggCGCgCG- -5'
9381 3' -55.1 NC_002512.2 + 165470 0.66 0.973059
Target:  5'- -cGAUcgGaagaUCCCGAguuucgggUGGCUGCGCGUg -3'
miRNA:   3'- cuCUAuaCc---AGGGCU--------ACUGGCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 130742 0.66 0.973059
Target:  5'- aGAGAUccGaGUCCCcuugcuaaaGAUcGCCGCgGCGCg -3'
miRNA:   3'- -CUCUAuaC-CAGGG---------CUAcUGGCG-CGCG- -5'
9381 3' -55.1 NC_002512.2 + 96501 0.66 0.973059
Target:  5'- ----cAUGGUCCgGgcGACCGCcggagggagccGCGCc -3'
miRNA:   3'- cucuaUACCAGGgCuaCUGGCG-----------CGCG- -5'
9381 3' -55.1 NC_002512.2 + 33049 0.66 0.972259
Target:  5'- cGGGGUGUGGcUCCa-GUgaacgcucucaaaaGACCGgCGCGCg -3'
miRNA:   3'- -CUCUAUACC-AGGgcUA--------------CUGGC-GCGCG- -5'
9381 3' -55.1 NC_002512.2 + 144539 0.66 0.967398
Target:  5'- ------cGGUCCUcGUGugCGaCGCGCg -3'
miRNA:   3'- cucuauaCCAGGGcUACugGC-GCGCG- -5'
9381 3' -55.1 NC_002512.2 + 155054 0.66 0.964272
Target:  5'- gGGGAg--GGUCuCCGu---UCGCGCGCg -3'
miRNA:   3'- -CUCUauaCCAG-GGCuacuGGCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 92592 0.67 0.957404
Target:  5'- gGAGGggcggcGGUCCCGA-GGCCGguCGCGa -3'
miRNA:   3'- -CUCUaua---CCAGGGCUaCUGGC--GCGCg -5'
9381 3' -55.1 NC_002512.2 + 88138 0.67 0.957404
Target:  5'- cGGAUGUaGGggacgauccgCCCG-UGGCCGuCGUGCg -3'
miRNA:   3'- cUCUAUA-CCa---------GGGCuACUGGC-GCGCG- -5'
9381 3' -55.1 NC_002512.2 + 151074 0.67 0.957404
Target:  5'- gGGGAUGcGGUCUCGGU--CCGCGC-Cg -3'
miRNA:   3'- -CUCUAUaCCAGGGCUAcuGGCGCGcG- -5'
9381 3' -55.1 NC_002512.2 + 116470 0.67 0.957404
Target:  5'- gGGGcgGUGaUCCCGgcGGCCcaCGCGCa -3'
miRNA:   3'- -CUCuaUACcAGGGCuaCUGGc-GCGCG- -5'
9381 3' -55.1 NC_002512.2 + 95363 0.67 0.957404
Target:  5'- gGGGAUA-GGUCCCGucguaACCG-GCGUa -3'
miRNA:   3'- -CUCUAUaCCAGGGCuac--UGGCgCGCG- -5'
9381 3' -55.1 NC_002512.2 + 204534 0.67 0.953653
Target:  5'- uGAGAc---GUUUCGAggagGACCGCGUGCu -3'
miRNA:   3'- -CUCUauacCAGGGCUa---CUGGCGCGCG- -5'
9381 3' -55.1 NC_002512.2 + 95854 0.67 0.945497
Target:  5'- cGGGGgcgGcGUCCUcccagGGCCGCGCGCc -3'
miRNA:   3'- -CUCUauaC-CAGGGcua--CUGGCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.