Results 1 - 20 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9382 | 3' | -55.9 | NC_002512.2 | + | 116364 | 0.66 | 0.968723 |
Target: 5'- cGGCCug-GUGACCcGCuGCGUCAacaACu -3' miRNA: 3'- -CCGGcaaCGCUGGuUGcCGCAGUg--UG- -5' |
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9382 | 3' | -55.9 | NC_002512.2 | + | 184985 | 0.66 | 0.958717 |
Target: 5'- cGGCCGUcgacguggagcgcUGCGGCC--CGGUGcCGCu- -3' miRNA: 3'- -CCGGCA-------------ACGCUGGuuGCCGCaGUGug -5' |
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9382 | 3' | -55.9 | NC_002512.2 | + | 139166 | 0.66 | 0.95907 |
Target: 5'- aGGCCGUcuUGCcgcacucuagGGCCAGCaGGUaGUC-CACg -3' miRNA: 3'- -CCGGCA--ACG----------CUGGUUG-CCG-CAGuGUG- -5' |
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9382 | 3' | -55.9 | NC_002512.2 | + | 229388 | 0.66 | 0.95907 |
Target: 5'- gGGUagGggGaaagaaGGCCAACGGCG-CGCACc -3' miRNA: 3'- -CCGg-CaaCg-----CUGGUUGCCGCaGUGUG- -5' |
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9382 | 3' | -55.9 | NC_002512.2 | + | 112922 | 0.66 | 0.95907 |
Target: 5'- gGGgCGUcgGCGGCC--CGGUGgCGCGCg -3' miRNA: 3'- -CCgGCAa-CGCUGGuuGCCGCaGUGUG- -5' |
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9382 | 3' | -55.9 | NC_002512.2 | + | 227472 | 0.66 | 0.96249 |
Target: 5'- aGGCCGgggGCGGCCGGCcGCGa----- -3' miRNA: 3'- -CCGGCaa-CGCUGGUUGcCGCagugug -5' |
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9382 | 3' | -55.9 | NC_002512.2 | + | 184432 | 0.66 | 0.96249 |
Target: 5'- cGCCucgGCcGCCGcCGGCGUCGgACa -3' miRNA: 3'- cCGGcaaCGcUGGUuGCCGCAGUgUG- -5' |
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9382 | 3' | -55.9 | NC_002512.2 | + | 225156 | 0.66 | 0.96249 |
Target: 5'- aGCCGUcGCaGucgUCGGCGGCGUUGCAg -3' miRNA: 3'- cCGGCAaCG-Cu--GGUUGCCGCAGUGUg -5' |
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9382 | 3' | -55.9 | NC_002512.2 | + | 141475 | 0.66 | 0.963801 |
Target: 5'- aGCCGUcGCGACCGACacaucugagggagauGGCGUguucCAUggGCg -3' miRNA: 3'- cCGGCAaCGCUGGUUG---------------CCGCA----GUG--UG- -5' |
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9382 | 3' | -55.9 | NC_002512.2 | + | 111237 | 0.66 | 0.965706 |
Target: 5'- cGGCCGg-GCGcCCGGa-GCGUCGgGCg -3' miRNA: 3'- -CCGGCaaCGCuGGUUgcCGCAGUgUG- -5' |
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9382 | 3' | -55.9 | NC_002512.2 | + | 172647 | 0.66 | 0.965706 |
Target: 5'- cGGCgGUaGCGGCCuGCGGgGaCGCccGCg -3' miRNA: 3'- -CCGgCAaCGCUGGuUGCCgCaGUG--UG- -5' |
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9382 | 3' | -55.9 | NC_002512.2 | + | 200847 | 0.66 | 0.965706 |
Target: 5'- gGGCgCGgcGCGucucuGCCGcAUGGCGUCGacCACg -3' miRNA: 3'- -CCG-GCaaCGC-----UGGU-UGCCGCAGU--GUG- -5' |
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9382 | 3' | -55.9 | NC_002512.2 | + | 207444 | 0.66 | 0.965706 |
Target: 5'- uGGCCGUaGUaGcCCAGCGGaugggGUUGCGCg -3' miRNA: 3'- -CCGGCAaCG-CuGGUUGCCg----CAGUGUG- -5' |
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9382 | 3' | -55.9 | NC_002512.2 | + | 156293 | 0.66 | 0.965706 |
Target: 5'- uGGcCCGUcGUGAagUCGGCcGUGUCGCACg -3' miRNA: 3'- -CC-GGCAaCGCU--GGUUGcCGCAGUGUG- -5' |
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9382 | 3' | -55.9 | NC_002512.2 | + | 178706 | 0.66 | 0.967839 |
Target: 5'- cGGCCGccgcgUUGCuGGCCAggcccaguuucgagAUGGCGUC-CAg -3' miRNA: 3'- -CCGGC-----AACG-CUGGU--------------UGCCGCAGuGUg -5' |
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9382 | 3' | -55.9 | NC_002512.2 | + | 193216 | 0.66 | 0.967839 |
Target: 5'- cGCCGUUGCccggcagccuggggGucaacuGCCGACGGCGguucUACGCc -3' miRNA: 3'- cCGGCAACG--------------C------UGGUUGCCGCa---GUGUG- -5' |
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9382 | 3' | -55.9 | NC_002512.2 | + | 108444 | 0.66 | 0.96843 |
Target: 5'- gGGCCGggGgGuCCcuccccgGGCGGCGccggguUCGCGCu -3' miRNA: 3'- -CCGGCaaCgCuGG-------UUGCCGC------AGUGUG- -5' |
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9382 | 3' | -55.9 | NC_002512.2 | + | 185564 | 0.66 | 0.968723 |
Target: 5'- uGGCCGUcgagGgGACCuggAACGGCaG-CAUGCa -3' miRNA: 3'- -CCGGCAa---CgCUGG---UUGCCG-CaGUGUG- -5' |
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9382 | 3' | -55.9 | NC_002512.2 | + | 106728 | 0.66 | 0.968723 |
Target: 5'- cGGCCucgGCGGCgAucGCGGCGcCGC-Cg -3' miRNA: 3'- -CCGGcaaCGCUGgU--UGCCGCaGUGuG- -5' |
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9382 | 3' | -55.9 | NC_002512.2 | + | 119357 | 0.66 | 0.968723 |
Target: 5'- cGCCGgucacgGCGACuCGcucGCGGCG-CGCGg -3' miRNA: 3'- cCGGCaa----CGCUG-GU---UGCCGCaGUGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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