miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9382 3' -55.9 NC_002512.2 + 172647 0.66 0.965706
Target:  5'- cGGCgGUaGCGGCCuGCGGgGaCGCccGCg -3'
miRNA:   3'- -CCGgCAaCGCUGGuUGCCgCaGUG--UG- -5'
9382 3' -55.9 NC_002512.2 + 154744 0.78 0.417344
Target:  5'- cGGCC---GCGuCCGACGGCGUCGCGg -3'
miRNA:   3'- -CCGGcaaCGCuGGUUGCCGCAGUGUg -5'
9382 3' -55.9 NC_002512.2 + 184985 0.66 0.958717
Target:  5'- cGGCCGUcgacguggagcgcUGCGGCC--CGGUGcCGCu- -3'
miRNA:   3'- -CCGGCA-------------ACGCUGGuuGCCGCaGUGug -5'
9382 3' -55.9 NC_002512.2 + 139166 0.66 0.95907
Target:  5'- aGGCCGUcuUGCcgcacucuagGGCCAGCaGGUaGUC-CACg -3'
miRNA:   3'- -CCGGCA--ACG----------CUGGUUG-CCG-CAGuGUG- -5'
9382 3' -55.9 NC_002512.2 + 229388 0.66 0.95907
Target:  5'- gGGUagGggGaaagaaGGCCAACGGCG-CGCACc -3'
miRNA:   3'- -CCGg-CaaCg-----CUGGUUGCCGCaGUGUG- -5'
9382 3' -55.9 NC_002512.2 + 112922 0.66 0.95907
Target:  5'- gGGgCGUcgGCGGCC--CGGUGgCGCGCg -3'
miRNA:   3'- -CCgGCAa-CGCUGGuuGCCGCaGUGUG- -5'
9382 3' -55.9 NC_002512.2 + 227472 0.66 0.96249
Target:  5'- aGGCCGgggGCGGCCGGCcGCGa----- -3'
miRNA:   3'- -CCGGCaa-CGCUGGUUGcCGCagugug -5'
9382 3' -55.9 NC_002512.2 + 184432 0.66 0.96249
Target:  5'- cGCCucgGCcGCCGcCGGCGUCGgACa -3'
miRNA:   3'- cCGGcaaCGcUGGUuGCCGCAGUgUG- -5'
9382 3' -55.9 NC_002512.2 + 225156 0.66 0.96249
Target:  5'- aGCCGUcGCaGucgUCGGCGGCGUUGCAg -3'
miRNA:   3'- cCGGCAaCG-Cu--GGUUGCCGCAGUGUg -5'
9382 3' -55.9 NC_002512.2 + 141475 0.66 0.963801
Target:  5'- aGCCGUcGCGACCGACacaucugagggagauGGCGUguucCAUggGCg -3'
miRNA:   3'- cCGGCAaCGCUGGUUG---------------CCGCA----GUG--UG- -5'
9382 3' -55.9 NC_002512.2 + 111237 0.66 0.965706
Target:  5'- cGGCCGg-GCGcCCGGa-GCGUCGgGCg -3'
miRNA:   3'- -CCGGCaaCGCuGGUUgcCGCAGUgUG- -5'
9382 3' -55.9 NC_002512.2 + 119357 0.66 0.968723
Target:  5'- cGCCGgucacgGCGACuCGcucGCGGCG-CGCGg -3'
miRNA:   3'- cCGGCaa----CGCUG-GU---UGCCGCaGUGUg -5'
9382 3' -55.9 NC_002512.2 + 200847 0.66 0.965706
Target:  5'- gGGCgCGgcGCGucucuGCCGcAUGGCGUCGacCACg -3'
miRNA:   3'- -CCG-GCaaCGC-----UGGU-UGCCGCAGU--GUG- -5'
9382 3' -55.9 NC_002512.2 + 207444 0.66 0.965706
Target:  5'- uGGCCGUaGUaGcCCAGCGGaugggGUUGCGCg -3'
miRNA:   3'- -CCGGCAaCG-CuGGUUGCCg----CAGUGUG- -5'
9382 3' -55.9 NC_002512.2 + 156293 0.66 0.965706
Target:  5'- uGGcCCGUcGUGAagUCGGCcGUGUCGCACg -3'
miRNA:   3'- -CC-GGCAaCGCU--GGUUGcCGCAGUGUG- -5'
9382 3' -55.9 NC_002512.2 + 178706 0.66 0.967839
Target:  5'- cGGCCGccgcgUUGCuGGCCAggcccaguuucgagAUGGCGUC-CAg -3'
miRNA:   3'- -CCGGC-----AACG-CUGGU--------------UGCCGCAGuGUg -5'
9382 3' -55.9 NC_002512.2 + 193216 0.66 0.967839
Target:  5'- cGCCGUUGCccggcagccuggggGucaacuGCCGACGGCGguucUACGCc -3'
miRNA:   3'- cCGGCAACG--------------C------UGGUUGCCGCa---GUGUG- -5'
9382 3' -55.9 NC_002512.2 + 108444 0.66 0.96843
Target:  5'- gGGCCGggGgGuCCcuccccgGGCGGCGccggguUCGCGCu -3'
miRNA:   3'- -CCGGCaaCgCuGG-------UUGCCGC------AGUGUG- -5'
9382 3' -55.9 NC_002512.2 + 185564 0.66 0.968723
Target:  5'- uGGCCGUcgagGgGACCuggAACGGCaG-CAUGCa -3'
miRNA:   3'- -CCGGCAa---CgCUGG---UUGCCG-CaGUGUG- -5'
9382 3' -55.9 NC_002512.2 + 106728 0.66 0.968723
Target:  5'- cGGCCucgGCGGCgAucGCGGCGcCGC-Cg -3'
miRNA:   3'- -CCGGcaaCGCUGgU--UGCCGCaGUGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.