miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9382 3' -55.9 NC_002512.2 + 154744 0.78 0.417344
Target:  5'- cGGCC---GCGuCCGACGGCGUCGCGg -3'
miRNA:   3'- -CCGGcaaCGCuGGUUGCCGCAGUGUg -5'
9382 3' -55.9 NC_002512.2 + 90675 0.77 0.449411
Target:  5'- cGGCCGcgGCGGCCAgggccagguccucgACGGCGUCGg-- -3'
miRNA:   3'- -CCGGCaaCGCUGGU--------------UGCCGCAGUgug -5'
9382 3' -55.9 NC_002512.2 + 98356 0.75 0.564461
Target:  5'- uGGCCGUUgGCGuCCuucACGGCGUCucccgucccgggGCGCa -3'
miRNA:   3'- -CCGGCAA-CGCuGGu--UGCCGCAG------------UGUG- -5'
9382 3' -55.9 NC_002512.2 + 217606 0.74 0.603756
Target:  5'- gGGUCGUcgGCGACUcgGGCGGCGcCACGg -3'
miRNA:   3'- -CCGGCAa-CGCUGG--UUGCCGCaGUGUg -5'
9382 3' -55.9 NC_002512.2 + 184634 0.74 0.623548
Target:  5'- cGCCG--GCGGCCGACGGCGagUC-CGCg -3'
miRNA:   3'- cCGGCaaCGCUGGUUGCCGC--AGuGUG- -5'
9382 3' -55.9 NC_002512.2 + 142922 0.74 0.643363
Target:  5'- cGGCCGcUUcGuCGACCGACaGCGUCAC-Ca -3'
miRNA:   3'- -CCGGC-AA-C-GCUGGUUGcCGCAGUGuG- -5'
9382 3' -55.9 NC_002512.2 + 91876 0.74 0.643363
Target:  5'- cGCCGUccggcGCGGgCGGCGGCGcggCGCACg -3'
miRNA:   3'- cCGGCAa----CGCUgGUUGCCGCa--GUGUG- -5'
9382 3' -55.9 NC_002512.2 + 227612 0.73 0.663146
Target:  5'- cGGCCGgaggGCGGgCGGCGGCGgcgaggUCAgGCg -3'
miRNA:   3'- -CCGGCaa--CGCUgGUUGCCGC------AGUgUG- -5'
9382 3' -55.9 NC_002512.2 + 147564 0.72 0.712052
Target:  5'- cGCCGggGCGGCCcGCGGCccucUACACc -3'
miRNA:   3'- cCGGCaaCGCUGGuUGCCGca--GUGUG- -5'
9382 3' -55.9 NC_002512.2 + 126657 0.72 0.731226
Target:  5'- cGGCCGU--CGACgGGCGGCGaCGCGa -3'
miRNA:   3'- -CCGGCAacGCUGgUUGCCGCaGUGUg -5'
9382 3' -55.9 NC_002512.2 + 214466 0.72 0.731226
Target:  5'- aGGCCGUcuacUGCuuCCAccGCGGCGUCuucCGCc -3'
miRNA:   3'- -CCGGCA----ACGcuGGU--UGCCGCAGu--GUG- -5'
9382 3' -55.9 NC_002512.2 + 192572 0.72 0.740696
Target:  5'- uGGCCGggGCcucggagcgGACCGucccgcugcuGCGGCG-CGCGCg -3'
miRNA:   3'- -CCGGCaaCG---------CUGGU----------UGCCGCaGUGUG- -5'
9382 3' -55.9 NC_002512.2 + 215556 0.72 0.750078
Target:  5'- uGGCCGUcgGCG-CCu-CGGCGUCGucUACg -3'
miRNA:   3'- -CCGGCAa-CGCuGGuuGCCGCAGU--GUG- -5'
9382 3' -55.9 NC_002512.2 + 113168 0.71 0.759362
Target:  5'- cGGCCGggcGgGACgCGAcCGGCGUCGC-Cg -3'
miRNA:   3'- -CCGGCaa-CgCUG-GUU-GCCGCAGUGuG- -5'
9382 3' -55.9 NC_002512.2 + 125608 0.71 0.759362
Target:  5'- cGCCGgacGCGagaaagacGCCGGCGGCGacCACACa -3'
miRNA:   3'- cCGGCaa-CGC--------UGGUUGCCGCa-GUGUG- -5'
9382 3' -55.9 NC_002512.2 + 157824 0.71 0.767629
Target:  5'- gGGCCGgccGCGACCuucuacaAGCGGCa-CGCGCa -3'
miRNA:   3'- -CCGGCaa-CGCUGG-------UUGCCGcaGUGUG- -5'
9382 3' -55.9 NC_002512.2 + 98815 0.71 0.777606
Target:  5'- cGGCCGgaGCGACgGAuCGGCcUCcgGCGCg -3'
miRNA:   3'- -CCGGCaaCGCUGgUU-GCCGcAG--UGUG- -5'
9382 3' -55.9 NC_002512.2 + 138210 0.71 0.777606
Target:  5'- -aCCGUcGgGGCCGACGGaCGUcCGCGCg -3'
miRNA:   3'- ccGGCAaCgCUGGUUGCC-GCA-GUGUG- -5'
9382 3' -55.9 NC_002512.2 + 170352 0.71 0.777606
Target:  5'- uGGCCGcgaucagcGUGGCCAgggccgugcGCGGCGcCGCGCu -3'
miRNA:   3'- -CCGGCaa------CGCUGGU---------UGCCGCaGUGUG- -5'
9382 3' -55.9 NC_002512.2 + 162154 0.71 0.786549
Target:  5'- aGGCCGgcacGcCGACCGcgaaaGCGGCcgcguccgucgGUCACACa -3'
miRNA:   3'- -CCGGCaa--C-GCUGGU-----UGCCG-----------CAGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.