miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9382 3' -55.9 NC_002512.2 + 150 0.66 0.951602
Target:  5'- cGGgCGggGCG-CCGGCGGaGgagCGCGCg -3'
miRNA:   3'- -CCgGCaaCGCuGGUUGCCgCa--GUGUG- -5'
9382 3' -55.9 NC_002512.2 + 4623 0.66 0.958717
Target:  5'- cGGCCuGUcggugGUGACCugGACGGUGguggggaUCGCGCu -3'
miRNA:   3'- -CCGG-CAa----CGCUGG--UUGCCGC-------AGUGUG- -5'
9382 3' -55.9 NC_002512.2 + 73342 0.71 0.804037
Target:  5'- aGCCGUcacGCGcuCCGAacCGGCGUCGCAg -3'
miRNA:   3'- cCGGCAa--CGCu-GGUU--GCCGCAGUGUg -5'
9382 3' -55.9 NC_002512.2 + 74415 0.68 0.918561
Target:  5'- uGGCCGUcucuucuuCGACCGACGgucccggcGCGUCGCuCa -3'
miRNA:   3'- -CCGGCAac------GCUGGUUGC--------CGCAGUGuG- -5'
9382 3' -55.9 NC_002512.2 + 75737 0.66 0.951602
Target:  5'- cGCCGaacgggagGCGACCgAGCGcGCGUCGgagacCGCg -3'
miRNA:   3'- cCGGCaa------CGCUGG-UUGC-CGCAGU-----GUG- -5'
9382 3' -55.9 NC_002512.2 + 76833 0.69 0.867576
Target:  5'- --aCGUUacucucaacGCGGCCGACGGCGUUcgaguaggGCGCg -3'
miRNA:   3'- ccgGCAA---------CGCUGGUUGCCGCAG--------UGUG- -5'
9382 3' -55.9 NC_002512.2 + 89425 0.68 0.918561
Target:  5'- aGGCCucggGCG-UCGGCGGgGUCACGu -3'
miRNA:   3'- -CCGGcaa-CGCuGGUUGCCgCAGUGUg -5'
9382 3' -55.9 NC_002512.2 + 89623 0.67 0.934058
Target:  5'- gGGCCGgacUGCGgacgaaGCCGACGGgG-CGgACg -3'
miRNA:   3'- -CCGGCa--ACGC------UGGUUGCCgCaGUgUG- -5'
9382 3' -55.9 NC_002512.2 + 90509 0.68 0.912948
Target:  5'- gGGCCGa---GGCCGGCGGCGgacgacgggaACGCg -3'
miRNA:   3'- -CCGGCaacgCUGGUUGCCGCag--------UGUG- -5'
9382 3' -55.9 NC_002512.2 + 90632 0.67 0.943271
Target:  5'- cGGgCGgcGCGACC--CGGCGcCGCGg -3'
miRNA:   3'- -CCgGCaaCGCUGGuuGCCGCaGUGUg -5'
9382 3' -55.9 NC_002512.2 + 90675 0.77 0.449411
Target:  5'- cGGCCGcgGCGGCCAgggccagguccucgACGGCGUCGg-- -3'
miRNA:   3'- -CCGGCaaCGCUGGU--------------UGCCGCAGUgug -5'
9382 3' -55.9 NC_002512.2 + 91876 0.74 0.643363
Target:  5'- cGCCGUccggcGCGGgCGGCGGCGcggCGCACg -3'
miRNA:   3'- cCGGCAa----CGCUgGUUGCCGCa--GUGUG- -5'
9382 3' -55.9 NC_002512.2 + 92542 0.71 0.786549
Target:  5'- cGGCCGcgGCGGCCG-CGGCGaCG-ACg -3'
miRNA:   3'- -CCGGCaaCGCUGGUuGCCGCaGUgUG- -5'
9382 3' -55.9 NC_002512.2 + 94249 0.71 0.790091
Target:  5'- aGGCCGccgGCGACCcgGACccccgagaacucgcuGGCGUC-CACg -3'
miRNA:   3'- -CCGGCaa-CGCUGG--UUG---------------CCGCAGuGUG- -5'
9382 3' -55.9 NC_002512.2 + 96226 0.68 0.894784
Target:  5'- cGGCCGcgGCGG-CGGCGGCGaC-CGCc -3'
miRNA:   3'- -CCGGCaaCGCUgGUUGCCGCaGuGUG- -5'
9382 3' -55.9 NC_002512.2 + 98137 0.68 0.894784
Target:  5'- uGGUCGUcGCGGCCGcccgcccCGGCgGUCGcCGCg -3'
miRNA:   3'- -CCGGCAaCGCUGGUu------GCCG-CAGU-GUG- -5'
9382 3' -55.9 NC_002512.2 + 98356 0.75 0.564461
Target:  5'- uGGCCGUUgGCGuCCuucACGGCGUCucccgucccgggGCGCa -3'
miRNA:   3'- -CCGGCAA-CGCuGGu--UGCCGCAG------------UGUG- -5'
9382 3' -55.9 NC_002512.2 + 98815 0.71 0.777606
Target:  5'- cGGCCGgaGCGACgGAuCGGCcUCcgGCGCg -3'
miRNA:   3'- -CCGGCaaCGCUGgUU-GCCGcAG--UGUG- -5'
9382 3' -55.9 NC_002512.2 + 99908 0.67 0.947545
Target:  5'- cGCCGgcGCucCCGGCGGUGUUcgauCGCg -3'
miRNA:   3'- cCGGCaaCGcuGGUUGCCGCAGu---GUG- -5'
9382 3' -55.9 NC_002512.2 + 101425 0.71 0.804037
Target:  5'- gGGCacaGcgGCGGCCGGCGGCGcggCgACGCc -3'
miRNA:   3'- -CCGg--CaaCGCUGGUUGCCGCa--G-UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.