Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9382 | 5' | -54.7 | NC_002512.2 | + | 227613 | 0.68 | 0.928954 |
Target: 5'- ---gGCCGGAggGCggGCggCGGCGGCg -3' miRNA: 3'- aacaCGGCUUaaCGa-CGa-GCUGCCGg -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 224944 | 0.69 | 0.886877 |
Target: 5'- -cGUGCCGG--UGUcGCUCGGCuccGCCg -3' miRNA: 3'- aaCACGGCUuaACGaCGAGCUGc--CGG- -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 224614 | 0.66 | 0.972235 |
Target: 5'- -gGUGCCGAccgg--GCUCGgggucgccgccGCGGCCu -3' miRNA: 3'- aaCACGGCUuaacgaCGAGC-----------UGCCGG- -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 223625 | 0.76 | 0.543336 |
Target: 5'- cUGUcGCUGG--UGCUGCUCGGCGGgCu -3' miRNA: 3'- aACA-CGGCUuaACGACGAGCUGCCgG- -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 221757 | 0.7 | 0.825703 |
Target: 5'- ---cGUCGAAcgGCaGCUgGGCGGCCg -3' miRNA: 3'- aacaCGGCUUaaCGaCGAgCUGCCGG- -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 219245 | 0.66 | 0.963072 |
Target: 5'- -cGUGCuCGGccgccucugGCUGCUCGucCGGCa -3' miRNA: 3'- aaCACG-GCUuaa------CGACGAGCu-GCCGg -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 215168 | 0.67 | 0.955905 |
Target: 5'- cUG-GCCGuccUGCUGCUCGGgGaGCg -3' miRNA: 3'- aACaCGGCuuaACGACGAGCUgC-CGg -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 211290 | 0.67 | 0.938868 |
Target: 5'- gUGcGCCGAG-UGCgGCaugCGGCGGUCc -3' miRNA: 3'- aACaCGGCUUaACGaCGa--GCUGCCGG- -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 209933 | 0.69 | 0.879953 |
Target: 5'- --aUGCuCGAGgucuucgUGCUGCUCGACcgGGCg -3' miRNA: 3'- aacACG-GCUUa------ACGACGAGCUG--CCGg -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 202494 | 0.67 | 0.955905 |
Target: 5'- --cUGCCGAcucaGCaGUUCGGCGGCg -3' miRNA: 3'- aacACGGCUuaa-CGaCGAGCUGCCGg -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 198269 | 0.79 | 0.38735 |
Target: 5'- -aGUGCCGGA--GCUGCUCGA-GGCUg -3' miRNA: 3'- aaCACGGCUUaaCGACGAGCUgCCGG- -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 190131 | 0.66 | 0.963072 |
Target: 5'- ---aGCUGcg-UGCUGCUCGcCuGGCCc -3' miRNA: 3'- aacaCGGCuuaACGACGAGCuG-CCGG- -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 186795 | 0.66 | 0.969385 |
Target: 5'- ---aGCCGuccccGCUGCUCGcCGcGCCc -3' miRNA: 3'- aacaCGGCuuaa-CGACGAGCuGC-CGG- -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 186464 | 0.69 | 0.900055 |
Target: 5'- ---cGCCuccgUGCUGCUCGGcCGGCg -3' miRNA: 3'- aacaCGGcuuaACGACGAGCU-GCCGg -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 185505 | 0.66 | 0.972235 |
Target: 5'- ---cGCCGg---GCUGCgCGGgGGCCu -3' miRNA: 3'- aacaCGGCuuaaCGACGaGCUgCCGG- -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 184405 | 0.66 | 0.970549 |
Target: 5'- ---cGCCGGGggGC-GCUCGGCcuucuccgucgccucGGCCg -3' miRNA: 3'- aacaCGGCUUaaCGaCGAGCUG---------------CCGG- -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 182456 | 0.68 | 0.934029 |
Target: 5'- -cGUGCgGGcgUGgUGCUCG-UGGCa -3' miRNA: 3'- aaCACGgCUuaACgACGAGCuGCCGg -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 176457 | 0.7 | 0.864711 |
Target: 5'- -gGUGUCGggUUccGCgGCUCucuucuccuggauGGCGGCCg -3' miRNA: 3'- aaCACGGCuuAA--CGaCGAG-------------CUGCCGG- -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 158918 | 0.67 | 0.955905 |
Target: 5'- ---gGCCGAGUacgGCUucggcgggggcGC-CGGCGGCCu -3' miRNA: 3'- aacaCGGCUUAa--CGA-----------CGaGCUGCCGG- -5' |
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9382 | 5' | -54.7 | NC_002512.2 | + | 150935 | 0.66 | 0.969385 |
Target: 5'- ---aGCCGGAcuuagGCUcCGGCGGCCg -3' miRNA: 3'- aacaCGGCUUaacgaCGA-GCUGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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