miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9383 3' -58.8 NC_002512.2 + 122306 0.66 0.891554
Target:  5'- -cGUGACCaagaaggcgaacgugGCCCugAGgCGGgggaCGGACa -3'
miRNA:   3'- guCACUGG---------------CGGGugUCgGCUa---GCCUG- -5'
9383 3' -58.8 NC_002512.2 + 134861 0.66 0.888974
Target:  5'- aCAGccUGACCGCCCcccuGCCc--CGGACg -3'
miRNA:   3'- -GUC--ACUGGCGGGugu-CGGcuaGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 149503 0.66 0.888974
Target:  5'- gGGUGGuCaaaaGgCCGCGGCCGGagCGGGCc -3'
miRNA:   3'- gUCACU-Gg---CgGGUGUCGGCUa-GCCUG- -5'
9383 3' -58.8 NC_002512.2 + 93711 0.66 0.888974
Target:  5'- cCGGcGAccCCGCCgCGCGGCgGAUCgacggGGACg -3'
miRNA:   3'- -GUCaCU--GGCGG-GUGUCGgCUAG-----CCUG- -5'
9383 3' -58.8 NC_002512.2 + 121333 0.66 0.888974
Target:  5'- aCGGUGACCucGCUCcgGCGGCgGGgccgUUGGACg -3'
miRNA:   3'- -GUCACUGG--CGGG--UGUCGgCU----AGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 131996 0.66 0.888974
Target:  5'- -cGUgGGCCGCCCcggGC-GCCGGggGGACc -3'
miRNA:   3'- guCA-CUGGCGGG---UGuCGGCUagCCUG- -5'
9383 3' -58.8 NC_002512.2 + 200709 0.66 0.882381
Target:  5'- gGGUGgcgucgggcuGCCGCCCgGCGGuCCGAaCGGGu -3'
miRNA:   3'- gUCAC----------UGGCGGG-UGUC-GGCUaGCCUg -5'
9383 3' -58.8 NC_002512.2 + 194634 0.66 0.882381
Target:  5'- gCGGggGACCuGCCCGuccucuucuCCGAUCGGGCg -3'
miRNA:   3'- -GUCa-CUGG-CGGGUguc------GGCUAGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 171843 0.66 0.882381
Target:  5'- gCGGgacgGuCCGgCCGCGGCCGGgaggGGGCg -3'
miRNA:   3'- -GUCa---CuGGCgGGUGUCGGCUag--CCUG- -5'
9383 3' -58.8 NC_002512.2 + 108425 0.66 0.882381
Target:  5'- --cUGcGCCGCCCGgGGCCGGgggcCGGGg -3'
miRNA:   3'- gucAC-UGGCGGGUgUCGGCUa---GCCUg -5'
9383 3' -58.8 NC_002512.2 + 92596 0.66 0.875584
Target:  5'- gGGcGGCgGuCCCGaGGCCGGUCGcGACg -3'
miRNA:   3'- gUCaCUGgC-GGGUgUCGGCUAGC-CUG- -5'
9383 3' -58.8 NC_002512.2 + 98146 0.66 0.875584
Target:  5'- ---cGGCCGCCCGCcccGGCggucgccgCGGUCuGGACg -3'
miRNA:   3'- gucaCUGGCGGGUG---UCG--------GCUAG-CCUG- -5'
9383 3' -58.8 NC_002512.2 + 144633 0.66 0.868588
Target:  5'- -cGUGGCgGCCaCGCGGCgGAUCuacGACc -3'
miRNA:   3'- guCACUGgCGG-GUGUCGgCUAGc--CUG- -5'
9383 3' -58.8 NC_002512.2 + 92633 0.66 0.868588
Target:  5'- aCGGcGGCCGCCgGC-GCCGGgacccgcgCGGAUn -3'
miRNA:   3'- -GUCaCUGGCGGgUGuCGGCUa-------GCCUG- -5'
9383 3' -58.8 NC_002512.2 + 170348 0.66 0.868588
Target:  5'- uCGGUGGCCGCgaucagcguggCCAgGGCCGugcgCGG-Cg -3'
miRNA:   3'- -GUCACUGGCG-----------GGUgUCGGCua--GCCuG- -5'
9383 3' -58.8 NC_002512.2 + 139465 0.66 0.868588
Target:  5'- gAGUcGACCGCuaCUAUGGCCG--CGGACg -3'
miRNA:   3'- gUCA-CUGGCG--GGUGUCGGCuaGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 109114 0.66 0.867878
Target:  5'- -----cCCGCCgACGGCCGccgaguccagcacGUCGGACu -3'
miRNA:   3'- gucacuGGCGGgUGUCGGC-------------UAGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 169325 0.67 0.85402
Target:  5'- cCAGaaAUCGCguuCCACGGCCGA-CGGAUa -3'
miRNA:   3'- -GUCacUGGCG---GGUGUCGGCUaGCCUG- -5'
9383 3' -58.8 NC_002512.2 + 121566 0.67 0.85402
Target:  5'- ---cGACCGCCCGCcgcgcGCCGccaUGGACc -3'
miRNA:   3'- gucaCUGGCGGGUGu----CGGCua-GCCUG- -5'
9383 3' -58.8 NC_002512.2 + 95160 0.67 0.85402
Target:  5'- gAG-GACCGgagccuucCCCACGGCCcccaggauGUCGGGCa -3'
miRNA:   3'- gUCaCUGGC--------GGGUGUCGGc-------UAGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.