miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9385 3' -53.2 NC_002512.2 + 116735 0.66 0.992749
Target:  5'- aCgUGGCCCGGCugauggcgauGGAcCAGGcCAGCcGCu -3'
miRNA:   3'- -GgACUGGGCUGu---------UCU-GUCU-GUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 202656 0.66 0.992749
Target:  5'- gCCcGGCCCGcucccuCAGGGCAcGGCGGCg-- -3'
miRNA:   3'- -GGaCUGGGCu-----GUUCUGU-CUGUCGacg -5'
9385 3' -53.2 NC_002512.2 + 113271 0.66 0.992749
Target:  5'- --gGGCggCCGGCGGGGCAGccGCGGCggGCc -3'
miRNA:   3'- ggaCUG--GGCUGUUCUGUC--UGUCGa-CG- -5'
9385 3' -53.2 NC_002512.2 + 170085 0.66 0.992749
Target:  5'- gCCUGGCCUG-CuucuuGGGCAGcuuguacuGCAGCcGCc -3'
miRNA:   3'- -GGACUGGGCuGu----UCUGUC--------UGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 185365 0.66 0.992749
Target:  5'- gCCgucGACUgCGACAccuucGGCGG-CGGCUGCg -3'
miRNA:   3'- -GGa--CUGG-GCUGUu----CUGUCuGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 88996 0.66 0.992749
Target:  5'- --cGACCCGgagcGCGGGGacguCGGGCAGC-GCg -3'
miRNA:   3'- ggaCUGGGC----UGUUCU----GUCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 135176 0.66 0.992551
Target:  5'- gCCUGcgcCCCGcgcaccGCGAGcugucgcacgaGGGCAGCUGCg -3'
miRNA:   3'- -GGACu--GGGC------UGUUCug---------UCUGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 190921 0.66 0.992348
Target:  5'- --gGACCUGACGAGGCAG-CGGaaccagacccggGCg -3'
miRNA:   3'- ggaCUGGGCUGUUCUGUCuGUCga----------CG- -5'
9385 3' -53.2 NC_002512.2 + 101868 0.66 0.991715
Target:  5'- --cGACCCGGCc--GCAG-CAGCcGCg -3'
miRNA:   3'- ggaCUGGGCUGuucUGUCuGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 105698 0.66 0.991715
Target:  5'- cUCUGucCCCGGC-GGACGaGCAGCcaggUGCa -3'
miRNA:   3'- -GGACu-GGGCUGuUCUGUcUGUCG----ACG- -5'
9385 3' -53.2 NC_002512.2 + 94907 0.66 0.991715
Target:  5'- --cGuCCCGGuCGccGGGCAGACAGCUcCg -3'
miRNA:   3'- ggaCuGGGCU-GU--UCUGUCUGUCGAcG- -5'
9385 3' -53.2 NC_002512.2 + 110272 0.66 0.991715
Target:  5'- --cGACCCgGugGAGuACuuccuGGAcCAGCUGCg -3'
miRNA:   3'- ggaCUGGG-CugUUC-UG-----UCU-GUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 149236 0.66 0.991715
Target:  5'- aCCgacgGACCCGGCGccgccgccGCGGACGGCcGg -3'
miRNA:   3'- -GGa---CUGGGCUGUuc------UGUCUGUCGaCg -5'
9385 3' -53.2 NC_002512.2 + 185612 0.66 0.991715
Target:  5'- uCCUGGCCaaCGGCGucccguGuCGGuGCAGCUGUc -3'
miRNA:   3'- -GGACUGG--GCUGUu-----CuGUC-UGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 204878 0.66 0.991715
Target:  5'- --cGACCgaCGGCGAGcucuCGGACGGCgaGCg -3'
miRNA:   3'- ggaCUGG--GCUGUUCu---GUCUGUCGa-CG- -5'
9385 3' -53.2 NC_002512.2 + 223393 0.66 0.991605
Target:  5'- uCCUGAgCCUGGacgucguCAAGAaguuCAGCUGCg -3'
miRNA:   3'- -GGACU-GGGCU-------GUUCUgucuGUCGACG- -5'
9385 3' -53.2 NC_002512.2 + 228536 0.66 0.990567
Target:  5'- --cGACgagaCGACAcgggAGGCGGACGGCaGCc -3'
miRNA:   3'- ggaCUGg---GCUGU----UCUGUCUGUCGaCG- -5'
9385 3' -53.2 NC_002512.2 + 212143 0.66 0.990567
Target:  5'- aCCUGugCguCGGCGGGcACuggcggcgGGACGGCUGg -3'
miRNA:   3'- -GGACugG--GCUGUUC-UG--------UCUGUCGACg -5'
9385 3' -53.2 NC_002512.2 + 192086 0.66 0.990567
Target:  5'- cCCUGACCCagaGCgAGGGCGGcgucauguuccACGGgaGCg -3'
miRNA:   3'- -GGACUGGGc--UG-UUCUGUC-----------UGUCgaCG- -5'
9385 3' -53.2 NC_002512.2 + 191469 0.66 0.990567
Target:  5'- -gUGGgCCGAguaCGAGGCgccGGACAGCgcgGCg -3'
miRNA:   3'- ggACUgGGCU---GUUCUG---UCUGUCGa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.