miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9386 3' -54.3 NC_002512.2 + 105621 0.66 0.988238
Target:  5'- gGCAc-CGGCCgucgUCGGucuCCGAGACCc -3'
miRNA:   3'- gCGUaaGCUGG----AGCCuucGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 219705 0.66 0.988238
Target:  5'- aGCG-UCGGCgCUCGGGGcGCgaGAGGCg -3'
miRNA:   3'- gCGUaAGCUG-GAGCCUU-CGg-CUCUGg -5'
9386 3' -54.3 NC_002512.2 + 159354 0.66 0.988238
Target:  5'- uGUA-UCGGCgUCGG-GGUCGGGGCg -3'
miRNA:   3'- gCGUaAGCUGgAGCCuUCGGCUCUGg -5'
9386 3' -54.3 NC_002512.2 + 132565 0.66 0.988238
Target:  5'- cCGCccUCGACCcCGGcGGgCGcGGCCa -3'
miRNA:   3'- -GCGuaAGCUGGaGCCuUCgGCuCUGG- -5'
9386 3' -54.3 NC_002512.2 + 89415 0.66 0.987808
Target:  5'- gCGCGgaaccaGGCCUCGGgcGUCGgcggggucacguccGGGCCc -3'
miRNA:   3'- -GCGUaag---CUGGAGCCuuCGGC--------------UCUGG- -5'
9386 3' -54.3 NC_002512.2 + 121433 0.66 0.986758
Target:  5'- cCGCGgagUCGGCCcCGGA-GCCcugaGGGGuCCg -3'
miRNA:   3'- -GCGUa--AGCUGGaGCCUuCGG----CUCU-GG- -5'
9386 3' -54.3 NC_002512.2 + 101445 0.66 0.986758
Target:  5'- gCGCGgcgaCG-CCgagagCGGGgggguggacaccGGCCGAGACCc -3'
miRNA:   3'- -GCGUaa--GCuGGa----GCCU------------UCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 222405 0.66 0.986758
Target:  5'- aGCGccgCGGCUUCGGcggGGGCCGGcaGCCg -3'
miRNA:   3'- gCGUaa-GCUGGAGCC---UUCGGCUc-UGG- -5'
9386 3' -54.3 NC_002512.2 + 204757 0.66 0.986758
Target:  5'- aGCGauccCGGCCUgGGgcGCgGGGACg -3'
miRNA:   3'- gCGUaa--GCUGGAgCCuuCGgCUCUGg -5'
9386 3' -54.3 NC_002512.2 + 217590 0.66 0.985139
Target:  5'- gGCGgcgCcGCCUCGGggGUCGucGGCg -3'
miRNA:   3'- gCGUaa-GcUGGAGCCuuCGGCu-CUGg -5'
9386 3' -54.3 NC_002512.2 + 38705 0.66 0.985139
Target:  5'- gGcCAUgaaagUGACCUCGGAguuugaagagauAGCCGcacacuGGCCa -3'
miRNA:   3'- gC-GUAa----GCUGGAGCCU------------UCGGCu-----CUGG- -5'
9386 3' -54.3 NC_002512.2 + 203969 0.66 0.985139
Target:  5'- aCGCAcaUCGACCUCauGGAccGGauCCG-GACCg -3'
miRNA:   3'- -GCGUa-AGCUGGAG--CCU--UC--GGCuCUGG- -5'
9386 3' -54.3 NC_002512.2 + 150555 0.66 0.984098
Target:  5'- cCGCcg-CGACCUgGGAggggaggaggagcggGGCgCGGGACg -3'
miRNA:   3'- -GCGuaaGCUGGAgCCU---------------UCG-GCUCUGg -5'
9386 3' -54.3 NC_002512.2 + 118551 0.66 0.983374
Target:  5'- aCGCggUCG-CgUCGGAcGUCGGGAgCg -3'
miRNA:   3'- -GCGuaAGCuGgAGCCUuCGGCUCUgG- -5'
9386 3' -54.3 NC_002512.2 + 213033 0.66 0.983374
Target:  5'- uGCGUccgcCGGCUgCGGggGaUCGAGAUCg -3'
miRNA:   3'- gCGUAa---GCUGGaGCCuuC-GGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 103293 0.66 0.983374
Target:  5'- cCGCugaggagcCGGCCgucguaGGAcaggacGGCCGAGGCCc -3'
miRNA:   3'- -GCGuaa-----GCUGGag----CCU------UCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 94044 0.66 0.983374
Target:  5'- gGCGgugacggCGACCg-GGAagGGCgCGGGACCc -3'
miRNA:   3'- gCGUaa-----GCUGGagCCU--UCG-GCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 146957 0.66 0.983374
Target:  5'- aGCg--CGACgaCGGcGGCCGcGGCCg -3'
miRNA:   3'- gCGuaaGCUGgaGCCuUCGGCuCUGG- -5'
9386 3' -54.3 NC_002512.2 + 218746 0.66 0.982815
Target:  5'- gCGCGUgucCGGcCCUCGGAcuccucGGUuccccguccggggaCGAGGCCg -3'
miRNA:   3'- -GCGUAa--GCU-GGAGCCU------UCG--------------GCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 223260 0.66 0.981455
Target:  5'- gGCGUccgCGuCgUCGGggGgCGGGACg -3'
miRNA:   3'- gCGUAa--GCuGgAGCCuuCgGCUCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.