miRNA display CGI


Results 21 - 40 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9386 3' -54.3 NC_002512.2 + 216214 0.68 0.963121
Target:  5'- gGCcgUCG-CCUcgucCGGGAGCUGGaGCCg -3'
miRNA:   3'- gCGuaAGCuGGA----GCCUUCGGCUcUGG- -5'
9386 3' -54.3 NC_002512.2 + 214849 0.76 0.613927
Target:  5'- gCGC-UUCGACCU-GGAGGCCcaGGACCu -3'
miRNA:   3'- -GCGuAAGCUGGAgCCUUCGGc-UCUGG- -5'
9386 3' -54.3 NC_002512.2 + 213713 0.68 0.955754
Target:  5'- gGCuucUUCGACgUCGGA-GCUGAcgacguuGACCg -3'
miRNA:   3'- gCGu--AAGCUGgAGCCUuCGGCU-------CUGG- -5'
9386 3' -54.3 NC_002512.2 + 213033 0.66 0.983374
Target:  5'- uGCGUccgcCGGCUgCGGggGaUCGAGAUCg -3'
miRNA:   3'- gCGUAa---GCUGGaGCCuuC-GGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 212998 0.68 0.956126
Target:  5'- uCGCcg-CGGCCgUCGGGc-CCGGGGCCc -3'
miRNA:   3'- -GCGuaaGCUGG-AGCCUucGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 212425 0.69 0.924789
Target:  5'- gGCGggaggUCGAgUUCGGGccggccGGCCGcGACCg -3'
miRNA:   3'- gCGUa----AGCUgGAGCCU------UCGGCuCUGG- -5'
9386 3' -54.3 NC_002512.2 + 211985 0.72 0.821821
Target:  5'- gGCcgUCGuCCUCGG-GGCCGccGCCg -3'
miRNA:   3'- gCGuaAGCuGGAGCCuUCGGCucUGG- -5'
9386 3' -54.3 NC_002512.2 + 211265 0.67 0.979374
Target:  5'- aCGCcauGUUCGACCgcuuuugCGaGugcGCCGAGugCg -3'
miRNA:   3'- -GCG---UAAGCUGGa------GC-Cuu-CGGCUCugG- -5'
9386 3' -54.3 NC_002512.2 + 208864 0.67 0.966309
Target:  5'- uCGCuuaaUCGGCaCUCGGGgggacgggaggGGCCGGGAauccCCg -3'
miRNA:   3'- -GCGua--AGCUG-GAGCCU-----------UCGGCUCU----GG- -5'
9386 3' -54.3 NC_002512.2 + 208751 0.68 0.959377
Target:  5'- gGCAgUCGcCCa-GGAAGCCGAagcggaaGGCCa -3'
miRNA:   3'- gCGUaAGCuGGagCCUUCGGCU-------CUGG- -5'
9386 3' -54.3 NC_002512.2 + 204853 0.69 0.919416
Target:  5'- gGCggUCGGuCCUCguGGAGGuCCGcGACCg -3'
miRNA:   3'- gCGuaAGCU-GGAG--CCUUC-GGCuCUGG- -5'
9386 3' -54.3 NC_002512.2 + 204757 0.66 0.986758
Target:  5'- aGCGauccCGGCCUgGGgcGCgGGGACg -3'
miRNA:   3'- gCGUaa--GCUGGAgCCuuCGgCUCUGg -5'
9386 3' -54.3 NC_002512.2 + 203969 0.66 0.985139
Target:  5'- aCGCAcaUCGACCUCauGGAccGGauCCG-GACCg -3'
miRNA:   3'- -GCGUa-AGCUGGAG--CCU--UC--GGCuCUGG- -5'
9386 3' -54.3 NC_002512.2 + 202504 0.74 0.722321
Target:  5'- aGCAgUUCGGCggCGGAGGCgGAGGCg -3'
miRNA:   3'- gCGU-AAGCUGgaGCCUUCGgCUCUGg -5'
9386 3' -54.3 NC_002512.2 + 200865 0.68 0.949918
Target:  5'- cCGCAUggcgUCGACCacgccgcccaccacgUCGuucagcguGAAcGCCGAGGCCg -3'
miRNA:   3'- -GCGUA----AGCUGG---------------AGC--------CUU-CGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 196901 0.69 0.944028
Target:  5'- gGCGUcaUgGccaGCCUCauGGAGGCCGAGAgCa -3'
miRNA:   3'- gCGUA--AgC---UGGAG--CCUUCGGCUCUgG- -5'
9386 3' -54.3 NC_002512.2 + 196416 0.71 0.861183
Target:  5'- aCGCGgggggcggCGGCCgggUCGGGagaGGUCGGGGCCa -3'
miRNA:   3'- -GCGUaa------GCUGG---AGCCU---UCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 195283 0.72 0.830047
Target:  5'- uCGCGUUCc-CCgCGGggGCCGGcGCCg -3'
miRNA:   3'- -GCGUAAGcuGGaGCCuuCGGCUcUGG- -5'
9386 3' -54.3 NC_002512.2 + 195073 0.68 0.952311
Target:  5'- uCGUccggUCGGggaCUCGaGggGUCGAGGCCg -3'
miRNA:   3'- -GCGua--AGCUg--GAGC-CuuCGGCUCUGG- -5'
9386 3' -54.3 NC_002512.2 + 193439 0.67 0.979156
Target:  5'- gCGCGaccgCGGCCgccgguggCGGGAGCgggcccuccgggaCGAGGCCc -3'
miRNA:   3'- -GCGUaa--GCUGGa-------GCCUUCG-------------GCUCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.