miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9386 5' -53.7 NC_002512.2 + 226185 0.66 0.985831
Target:  5'- gGGAGCGAccGggUcgaccuccGUCGGGGaCGGGAGGa -3'
miRNA:   3'- gUCUCGCU--CuuA--------CGGCUCC-GUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 206206 0.66 0.985831
Target:  5'- aAGcAGCGGcGGUGCUGGGGCuuGAAGu -3'
miRNA:   3'- gUC-UCGCUcUUACGGCUCCGu-CUUCu -5'
9386 5' -53.7 NC_002512.2 + 201732 0.66 0.985831
Target:  5'- gCGGGGgGAGAcgacgGCUGGGGCgccgaucccGGggGAc -3'
miRNA:   3'- -GUCUCgCUCUua---CGGCUCCG---------UCuuCU- -5'
9386 5' -53.7 NC_002512.2 + 166472 0.66 0.985831
Target:  5'- gAGGGCGGGGAcggcggGaCCGcGGGuCGGAGGAa -3'
miRNA:   3'- gUCUCGCUCUUa-----C-GGC-UCC-GUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 96518 0.66 0.9848
Target:  5'- cCGGAGgGAGccgcgccggcgguguGA-GCCGGGGCcGggGAu -3'
miRNA:   3'- -GUCUCgCUC---------------UUaCGGCUCCGuCuuCU- -5'
9386 5' -53.7 NC_002512.2 + 228336 0.66 0.984082
Target:  5'- gGGAGCGAGcGUG-UGuGGgAGAGGAc -3'
miRNA:   3'- gUCUCGCUCuUACgGCuCCgUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 75774 0.66 0.982172
Target:  5'- gCGGAGCccGGGAGga-CGGGGCAGAgcGGGg -3'
miRNA:   3'- -GUCUCG--CUCUUacgGCUCCGUCU--UCU- -5'
9386 5' -53.7 NC_002512.2 + 195081 0.66 0.982172
Target:  5'- uCGGGGacuCGAGGG-GUCGAGGCcGAGGGg -3'
miRNA:   3'- -GUCUC---GCUCUUaCGGCUCCGuCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 131834 0.66 0.982172
Target:  5'- -cGAGcCGGGAGgaGCCG-GGCAGGcuAGAg -3'
miRNA:   3'- guCUC-GCUCUUa-CGGCuCCGUCU--UCU- -5'
9386 5' -53.7 NC_002512.2 + 130531 0.66 0.980096
Target:  5'- uCGGGucGCGGGAacAUGCCGgacAGGCGGuccGAGAc -3'
miRNA:   3'- -GUCU--CGCUCU--UACGGC---UCCGUC---UUCU- -5'
9386 5' -53.7 NC_002512.2 + 74655 0.66 0.980096
Target:  5'- -cGGGCGGGAcgGCCGcGGGCGc---- -3'
miRNA:   3'- guCUCGCUCUuaCGGC-UCCGUcuucu -5'
9386 5' -53.7 NC_002512.2 + 228503 0.66 0.980096
Target:  5'- aGGGGCGAGAGggacGCgGAGG-AGAgacGGAg -3'
miRNA:   3'- gUCUCGCUCUUa---CGgCUCCgUCU---UCU- -5'
9386 5' -53.7 NC_002512.2 + 208882 0.66 0.977845
Target:  5'- gGGGGaCGGGAGggGCCGGGaauccccgcGCGGGAGGc -3'
miRNA:   3'- gUCUC-GCUCUUa-CGGCUC---------CGUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 227477 0.66 0.977845
Target:  5'- gGGGGCGGccg-GCCgcgagGAGGUAGGAGAc -3'
miRNA:   3'- gUCUCGCUcuuaCGG-----CUCCGUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 101442 0.66 0.977845
Target:  5'- gCGGcGCGGcGAcGCCGAGaGCGGggGGg -3'
miRNA:   3'- -GUCuCGCUcUUaCGGCUC-CGUCuuCU- -5'
9386 5' -53.7 NC_002512.2 + 114197 0.66 0.977845
Target:  5'- -cGGGCccGGcgGCCaugagGAGGCGGAAGAu -3'
miRNA:   3'- guCUCGcuCUuaCGG-----CUCCGUCUUCU- -5'
9386 5' -53.7 NC_002512.2 + 228242 0.66 0.977845
Target:  5'- aAGGGCGAacGUGCCGGacGCGGggGc -3'
miRNA:   3'- gUCUCGCUcuUACGGCUc-CGUCuuCu -5'
9386 5' -53.7 NC_002512.2 + 227518 0.67 0.972788
Target:  5'- gGGGGgGAGAGU-CCGGcGGCGGAcgGGGg -3'
miRNA:   3'- gUCUCgCUCUUAcGGCU-CCGUCU--UCU- -5'
9386 5' -53.7 NC_002512.2 + 158829 0.67 0.972788
Target:  5'- ---uGCGGGAgGUGCUGAcGCGGggGAg -3'
miRNA:   3'- gucuCGCUCU-UACGGCUcCGUCuuCU- -5'
9386 5' -53.7 NC_002512.2 + 219872 0.67 0.969968
Target:  5'- -cGGGUGAcGAG-GCCGGGGUcGGAGAc -3'
miRNA:   3'- guCUCGCU-CUUaCGGCUCCGuCUUCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.