Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9386 | 5' | -53.7 | NC_002512.2 | + | 206206 | 0.66 | 0.985831 |
Target: 5'- aAGcAGCGGcGGUGCUGGGGCuuGAAGu -3' miRNA: 3'- gUC-UCGCUcUUACGGCUCCGu-CUUCu -5' |
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9386 | 5' | -53.7 | NC_002512.2 | + | 201732 | 0.66 | 0.985831 |
Target: 5'- gCGGGGgGAGAcgacgGCUGGGGCgccgaucccGGggGAc -3' miRNA: 3'- -GUCUCgCUCUua---CGGCUCCG---------UCuuCU- -5' |
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9386 | 5' | -53.7 | NC_002512.2 | + | 166472 | 0.66 | 0.985831 |
Target: 5'- gAGGGCGGGGAcggcggGaCCGcGGGuCGGAGGAa -3' miRNA: 3'- gUCUCGCUCUUa-----C-GGC-UCC-GUCUUCU- -5' |
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9386 | 5' | -53.7 | NC_002512.2 | + | 226185 | 0.66 | 0.985831 |
Target: 5'- gGGAGCGAccGggUcgaccuccGUCGGGGaCGGGAGGa -3' miRNA: 3'- gUCUCGCU--CuuA--------CGGCUCC-GUCUUCU- -5' |
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9386 | 5' | -53.7 | NC_002512.2 | + | 96518 | 0.66 | 0.9848 |
Target: 5'- cCGGAGgGAGccgcgccggcgguguGA-GCCGGGGCcGggGAu -3' miRNA: 3'- -GUCUCgCUC---------------UUaCGGCUCCGuCuuCU- -5' |
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9386 | 5' | -53.7 | NC_002512.2 | + | 228336 | 0.66 | 0.984082 |
Target: 5'- gGGAGCGAGcGUG-UGuGGgAGAGGAc -3' miRNA: 3'- gUCUCGCUCuUACgGCuCCgUCUUCU- -5' |
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9386 | 5' | -53.7 | NC_002512.2 | + | 75774 | 0.66 | 0.982172 |
Target: 5'- gCGGAGCccGGGAGga-CGGGGCAGAgcGGGg -3' miRNA: 3'- -GUCUCG--CUCUUacgGCUCCGUCU--UCU- -5' |
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9386 | 5' | -53.7 | NC_002512.2 | + | 195081 | 0.66 | 0.982172 |
Target: 5'- uCGGGGacuCGAGGG-GUCGAGGCcGAGGGg -3' miRNA: 3'- -GUCUC---GCUCUUaCGGCUCCGuCUUCU- -5' |
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9386 | 5' | -53.7 | NC_002512.2 | + | 131834 | 0.66 | 0.982172 |
Target: 5'- -cGAGcCGGGAGgaGCCG-GGCAGGcuAGAg -3' miRNA: 3'- guCUC-GCUCUUa-CGGCuCCGUCU--UCU- -5' |
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9386 | 5' | -53.7 | NC_002512.2 | + | 74655 | 0.66 | 0.980096 |
Target: 5'- -cGGGCGGGAcgGCCGcGGGCGc---- -3' miRNA: 3'- guCUCGCUCUuaCGGC-UCCGUcuucu -5' |
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9386 | 5' | -53.7 | NC_002512.2 | + | 130531 | 0.66 | 0.980096 |
Target: 5'- uCGGGucGCGGGAacAUGCCGgacAGGCGGuccGAGAc -3' miRNA: 3'- -GUCU--CGCUCU--UACGGC---UCCGUC---UUCU- -5' |
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9386 | 5' | -53.7 | NC_002512.2 | + | 228503 | 0.66 | 0.980096 |
Target: 5'- aGGGGCGAGAGggacGCgGAGG-AGAgacGGAg -3' miRNA: 3'- gUCUCGCUCUUa---CGgCUCCgUCU---UCU- -5' |
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9386 | 5' | -53.7 | NC_002512.2 | + | 228242 | 0.66 | 0.977845 |
Target: 5'- aAGGGCGAacGUGCCGGacGCGGggGc -3' miRNA: 3'- gUCUCGCUcuUACGGCUc-CGUCuuCu -5' |
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9386 | 5' | -53.7 | NC_002512.2 | + | 114197 | 0.66 | 0.977845 |
Target: 5'- -cGGGCccGGcgGCCaugagGAGGCGGAAGAu -3' miRNA: 3'- guCUCGcuCUuaCGG-----CUCCGUCUUCU- -5' |
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9386 | 5' | -53.7 | NC_002512.2 | + | 101442 | 0.66 | 0.977845 |
Target: 5'- gCGGcGCGGcGAcGCCGAGaGCGGggGGg -3' miRNA: 3'- -GUCuCGCUcUUaCGGCUC-CGUCuuCU- -5' |
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9386 | 5' | -53.7 | NC_002512.2 | + | 227477 | 0.66 | 0.977845 |
Target: 5'- gGGGGCGGccg-GCCgcgagGAGGUAGGAGAc -3' miRNA: 3'- gUCUCGCUcuuaCGG-----CUCCGUCUUCU- -5' |
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9386 | 5' | -53.7 | NC_002512.2 | + | 208882 | 0.66 | 0.977845 |
Target: 5'- gGGGGaCGGGAGggGCCGGGaauccccgcGCGGGAGGc -3' miRNA: 3'- gUCUC-GCUCUUa-CGGCUC---------CGUCUUCU- -5' |
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9386 | 5' | -53.7 | NC_002512.2 | + | 227518 | 0.67 | 0.972788 |
Target: 5'- gGGGGgGAGAGU-CCGGcGGCGGAcgGGGg -3' miRNA: 3'- gUCUCgCUCUUAcGGCU-CCGUCU--UCU- -5' |
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9386 | 5' | -53.7 | NC_002512.2 | + | 158829 | 0.67 | 0.972788 |
Target: 5'- ---uGCGGGAgGUGCUGAcGCGGggGAg -3' miRNA: 3'- gucuCGCUCU-UACGGCUcCGUCuuCU- -5' |
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9386 | 5' | -53.7 | NC_002512.2 | + | 226239 | 0.67 | 0.969968 |
Target: 5'- ---cGCGAGGggGCCGgAGGaGGAGGAg -3' miRNA: 3'- gucuCGCUCUuaCGGC-UCCgUCUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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