miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9387 3' -55.1 NC_002512.2 + 147700 0.66 0.969273
Target:  5'- -cGGcCGACgGCgGACGGGCUCucgacccuccuGACGCu -3'
miRNA:   3'- uaCCaGUUG-CGgUUGUCCGGG-----------UUGCG- -5'
9387 3' -55.1 NC_002512.2 + 70328 0.66 0.969273
Target:  5'- --cGUCAACaagGCCGAUcccGGCCCAucguCGCg -3'
miRNA:   3'- uacCAGUUG---CGGUUGu--CCGGGUu---GCG- -5'
9387 3' -55.1 NC_002512.2 + 111930 0.66 0.969273
Target:  5'- -cGGggAGCGuCCAcGCAGGCCUgaucGACGUa -3'
miRNA:   3'- uaCCagUUGC-GGU-UGUCCGGG----UUGCG- -5'
9387 3' -55.1 NC_002512.2 + 87611 0.66 0.969273
Target:  5'- --cGUCGACGCCGuccCcGGCCCGgACGa -3'
miRNA:   3'- uacCAGUUGCGGUu--GuCCGGGU-UGCg -5'
9387 3' -55.1 NC_002512.2 + 113939 0.66 0.969273
Target:  5'- -cGGcCAGCGagAGCAGGCCgcggaaGACGUg -3'
miRNA:   3'- uaCCaGUUGCggUUGUCCGGg-----UUGCG- -5'
9387 3' -55.1 NC_002512.2 + 196901 0.66 0.968977
Target:  5'- -gGcGUCAugGCCAGCcucauggAGGCCgAGaGCa -3'
miRNA:   3'- uaC-CAGUugCGGUUG-------UCCGGgUUgCG- -5'
9387 3' -55.1 NC_002512.2 + 228216 0.66 0.968977
Target:  5'- -cGGUCGAgGCCGggcgagacgGCGGgaagggcgaacguGCCgGACGCg -3'
miRNA:   3'- uaCCAGUUgCGGU---------UGUC-------------CGGgUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 59475 0.66 0.966227
Target:  5'- -aGGcCcuCGCCAGCGGGUCUcgAGCGg -3'
miRNA:   3'- uaCCaGuuGCGGUUGUCCGGG--UUGCg -5'
9387 3' -55.1 NC_002512.2 + 148585 0.66 0.966227
Target:  5'- cUGGcCAACaaacCCAccccGCAGGCCCGGacCGCc -3'
miRNA:   3'- uACCaGUUGc---GGU----UGUCCGGGUU--GCG- -5'
9387 3' -55.1 NC_002512.2 + 116692 0.66 0.966227
Target:  5'- cUGGcCGACGCCGcucuggaacaacGCAGccccggcacGUCCGACGUg -3'
miRNA:   3'- uACCaGUUGCGGU------------UGUC---------CGGGUUGCG- -5'
9387 3' -55.1 NC_002512.2 + 120883 0.66 0.966227
Target:  5'- -aGGaCGACGCC-GCcGGCgCCGACGa -3'
miRNA:   3'- uaCCaGUUGCGGuUGuCCG-GGUUGCg -5'
9387 3' -55.1 NC_002512.2 + 193811 0.66 0.966227
Target:  5'- uUGGUC-GCGCCGcuuCGGGgUCGGCGa -3'
miRNA:   3'- uACCAGuUGCGGUu--GUCCgGGUUGCg -5'
9387 3' -55.1 NC_002512.2 + 153345 0.66 0.966227
Target:  5'- -cGGUCcGgGUCGGCGGGUCC--CGCu -3'
miRNA:   3'- uaCCAGuUgCGGUUGUCCGGGuuGCG- -5'
9387 3' -55.1 NC_002512.2 + 190021 0.66 0.966227
Target:  5'- -cGGUCGAgGCCGACAugauccucuGCuCCGACGa -3'
miRNA:   3'- uaCCAGUUgCGGUUGUc--------CG-GGUUGCg -5'
9387 3' -55.1 NC_002512.2 + 75513 0.66 0.965911
Target:  5'- -cGGauuacccUCGACGUUGACGGGCaCCcucGACGCc -3'
miRNA:   3'- uaCC-------AGUUGCGGUUGUCCG-GG---UUGCG- -5'
9387 3' -55.1 NC_002512.2 + 212130 0.66 0.964951
Target:  5'- cUGGUCcccuaucaccuguGCGUCGGCGGGCaCUGGCGg -3'
miRNA:   3'- uACCAGu------------UGCGGUUGUCCG-GGUUGCg -5'
9387 3' -55.1 NC_002512.2 + 170350 0.66 0.962973
Target:  5'- gGUGGccgcgaucagCGugGCCA--GGGCCguGCGCg -3'
miRNA:   3'- -UACCa---------GUugCGGUugUCCGGguUGCG- -5'
9387 3' -55.1 NC_002512.2 + 205963 0.66 0.962973
Target:  5'- -aGGUCGccCGCguACAGGUUCGuCGCg -3'
miRNA:   3'- uaCCAGUu-GCGguUGUCCGGGUuGCG- -5'
9387 3' -55.1 NC_002512.2 + 219325 0.66 0.962973
Target:  5'- -gGGagAGCGUCGGCGuGGCCCGcCGg -3'
miRNA:   3'- uaCCagUUGCGGUUGU-CCGGGUuGCg -5'
9387 3' -55.1 NC_002512.2 + 118737 0.66 0.962973
Target:  5'- -cGG-CAGCGCgCagGugGGGCUgAACGCa -3'
miRNA:   3'- uaCCaGUUGCG-G--UugUCCGGgUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.