miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9387 5' -59.8 NC_002512.2 + 218340 0.66 0.871991
Target:  5'- uCGUccUCCUCGuCC-UCGUCCAGGUCg -3'
miRNA:   3'- cGCGcuAGGGGU-GGuGGCAGGUCCAG- -5'
9387 5' -59.8 NC_002512.2 + 185315 0.66 0.871991
Target:  5'- gGCGCGAggagcUgCCCGucugcgUCGCCGcCCGGGUg -3'
miRNA:   3'- -CGCGCU-----AgGGGU------GGUGGCaGGUCCAg -5'
9387 5' -59.8 NC_002512.2 + 138966 0.66 0.8713
Target:  5'- cGCGCcggCCCCguucgcgGCCGCCaGUCCGGccGUCc -3'
miRNA:   3'- -CGCGcuaGGGG-------UGGUGG-CAGGUC--CAG- -5'
9387 5' -59.8 NC_002512.2 + 188942 0.66 0.870607
Target:  5'- gGCGCGGcggucggUUCCCucuCCcCCGUCCcguucccguuuacAGGUCu -3'
miRNA:   3'- -CGCGCU-------AGGGGu--GGuGGCAGG-------------UCCAG- -5'
9387 5' -59.8 NC_002512.2 + 205337 0.66 0.867815
Target:  5'- aGCGgGAucucucuccccuccgUCCCCGCuCGCUGaCCGGGa- -3'
miRNA:   3'- -CGCgCU---------------AGGGGUG-GUGGCaGGUCCag -5'
9387 5' -59.8 NC_002512.2 + 217684 0.66 0.867815
Target:  5'- gGCGCuugggcuggcucuUCCCCGCCGgCGUCgacgAGGUCc -3'
miRNA:   3'- -CGCGcu-----------AGGGGUGGUgGCAGg---UCCAG- -5'
9387 5' -59.8 NC_002512.2 + 128770 0.66 0.864994
Target:  5'- uGCGCGAgcgcacgCCgCGCCGCgCGcuggCCgGGGUCu -3'
miRNA:   3'- -CGCGCUa------GGgGUGGUG-GCa---GG-UCCAG- -5'
9387 5' -59.8 NC_002512.2 + 33088 0.66 0.864994
Target:  5'- cGCGCGGUCaucgggaCCAuaucUCGCUGUCCGcGUCc -3'
miRNA:   3'- -CGCGCUAGg------GGU----GGUGGCAGGUcCAG- -5'
9387 5' -59.8 NC_002512.2 + 203559 0.66 0.864994
Target:  5'- cCGCG-UCCCuCGCCACCGa-CAGGcCc -3'
miRNA:   3'- cGCGCuAGGG-GUGGUGGCagGUCCaG- -5'
9387 5' -59.8 NC_002512.2 + 102673 0.66 0.857809
Target:  5'- aGgGCGG-CCgC-CCGCUGUCCGGGg- -3'
miRNA:   3'- -CgCGCUaGGgGuGGUGGCAGGUCCag -5'
9387 5' -59.8 NC_002512.2 + 135851 0.66 0.857809
Target:  5'- cCGaagaGAUCCgCCGCgaaACCGagcgUCCGGGUCa -3'
miRNA:   3'- cGCg---CUAGG-GGUGg--UGGC----AGGUCCAG- -5'
9387 5' -59.8 NC_002512.2 + 179739 0.66 0.857809
Target:  5'- aGCGCG-UCCacaACC-UCGUCCgGGGUCu -3'
miRNA:   3'- -CGCGCuAGGgg-UGGuGGCAGG-UCCAG- -5'
9387 5' -59.8 NC_002512.2 + 176259 0.66 0.857809
Target:  5'- cCGCuucUCCCCGCCGacgauCCGcUUCGGGUCc -3'
miRNA:   3'- cGCGcu-AGGGGUGGU-----GGC-AGGUCCAG- -5'
9387 5' -59.8 NC_002512.2 + 126676 0.66 0.853411
Target:  5'- aCGCGAgccgccucggauacCCCCGCuCGCCGggcaggCuCAGGUCc -3'
miRNA:   3'- cGCGCUa-------------GGGGUG-GUGGCa-----G-GUCCAG- -5'
9387 5' -59.8 NC_002512.2 + 184622 0.66 0.850444
Target:  5'- aGCGCGAgcCCCCGCCGgCGgCCGacGG-Cg -3'
miRNA:   3'- -CGCGCUa-GGGGUGGUgGCaGGU--CCaG- -5'
9387 5' -59.8 NC_002512.2 + 132134 0.66 0.850444
Target:  5'- cCGCGAgcaagacgaCCGCCACC-UCgAGGUCg -3'
miRNA:   3'- cGCGCUagg------GGUGGUGGcAGgUCCAG- -5'
9387 5' -59.8 NC_002512.2 + 169560 0.66 0.850444
Target:  5'- gGCGUGGccuucgccggcgUCUCCGCguCCG-CCAGGUa -3'
miRNA:   3'- -CGCGCU------------AGGGGUGguGGCaGGUCCAg -5'
9387 5' -59.8 NC_002512.2 + 174771 0.66 0.850444
Target:  5'- cCGCGuccGUCUCCGCgaACuCGUCCAGGa- -3'
miRNA:   3'- cGCGC---UAGGGGUGg-UG-GCAGGUCCag -5'
9387 5' -59.8 NC_002512.2 + 153313 0.66 0.842902
Target:  5'- gGC-CGGUUCCCGcuggggugguuCCGCUgggccgGUCCGGGUCg -3'
miRNA:   3'- -CGcGCUAGGGGU-----------GGUGG------CAGGUCCAG- -5'
9387 5' -59.8 NC_002512.2 + 140144 0.66 0.842902
Target:  5'- cGCGgGAaccUCuCCCACgACCuccgGUCCcaAGGUCa -3'
miRNA:   3'- -CGCgCU---AG-GGGUGgUGG----CAGG--UCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.