miRNA display CGI


Results 1 - 20 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9447 5' -48.3 NC_002531.1 + 35326 0.66 0.999288
Target:  5'- cGAAGCCcAGGUCgGCUggguCACUGGACUa -3'
miRNA:   3'- cCUUCGGuUUUAGgUGG----GUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 2818 0.68 0.99469
Target:  5'- ---cGCUAAucuGGUCUugCUACUAAACCg -3'
miRNA:   3'- ccuuCGGUU---UUAGGugGGUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 20517 0.68 0.991724
Target:  5'- gGGAAGCCAc--UCU-CCC-CCAGACa -3'
miRNA:   3'- -CCUUCGGUuuuAGGuGGGuGGUUUGg -5'
9447 5' -48.3 NC_002531.1 + 103563 1.15 0.006065
Target:  5'- aGGAAGCCAAAAUCCACCCACCAAACCc -3'
miRNA:   3'- -CCUUCGGUUUUAGGUGGGUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 69736 0.66 0.998921
Target:  5'- gGGguGCUguAAUuacuaugcaCCGCCCGCCAagaAACCu -3'
miRNA:   3'- -CCuuCGGuuUUA---------GGUGGGUGGU---UUGG- -5'
9447 5' -48.3 NC_002531.1 + 96721 0.66 0.998684
Target:  5'- --cAGCCAAAAagucUCCACCUcucCCAcgucAGCCu -3'
miRNA:   3'- ccuUCGGUUUU----AGGUGGGu--GGU----UUGG- -5'
9447 5' -48.3 NC_002531.1 + 113164 0.66 0.998404
Target:  5'- cGGuuuGCCAuuuGAGUgUGCCCuGCCAGGCUu -3'
miRNA:   3'- -CCuu-CGGU---UUUAgGUGGG-UGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 117196 0.67 0.997852
Target:  5'- aGGAAGUgAAGAagauaaaaaacccuuUCCAugUCCACgAAGCCc -3'
miRNA:   3'- -CCUUCGgUUUU---------------AGGU--GGGUGgUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 120235 0.67 0.99673
Target:  5'- uGGcGGGCCA---UCCACUagaACCAGagGCCa -3'
miRNA:   3'- -CC-UUCGGUuuuAGGUGGg--UGGUU--UGG- -5'
9447 5' -48.3 NC_002531.1 + 87494 0.68 0.995461
Target:  5'- uGGAcGCCAgcGAGUCCcucaagcaGCCaGCCGAACa -3'
miRNA:   3'- -CCUuCGGU--UUUAGG--------UGGgUGGUUUGg -5'
9447 5' -48.3 NC_002531.1 + 86406 0.67 0.996138
Target:  5'- uGGggGUC----UCCACCUAUCuauACCu -3'
miRNA:   3'- -CCuuCGGuuuuAGGUGGGUGGuu-UGG- -5'
9447 5' -48.3 NC_002531.1 + 23539 0.67 0.997245
Target:  5'- aGAGGCCAAcAUUC-CCCACaauGACa -3'
miRNA:   3'- cCUUCGGUUuUAGGuGGGUGgu-UUGg -5'
9447 5' -48.3 NC_002531.1 + 94844 0.66 0.999191
Target:  5'- uGAAGCUAAAgacacuguggcauauGguggCC-CCCACaCGAGCCa -3'
miRNA:   3'- cCUUCGGUUU---------------Ua---GGuGGGUG-GUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 113454 0.67 0.996138
Target:  5'- uGGcAGCCGcaccagCCACUCGCCGcagacggucAGCCa -3'
miRNA:   3'- -CCuUCGGUuuua--GGUGGGUGGU---------UUGG- -5'
9447 5' -48.3 NC_002531.1 + 58126 0.66 0.999121
Target:  5'- uGGGuuCCAAAgcgGUCC-CCCACgGAcACCg -3'
miRNA:   3'- -CCUucGGUUU---UAGGuGGGUGgUU-UGG- -5'
9447 5' -48.3 NC_002531.1 + 39196 0.67 0.997691
Target:  5'- aGGGuAGUCuu--UCCugCCGCCAuacACCc -3'
miRNA:   3'- -CCU-UCGGuuuuAGGugGGUGGUu--UGG- -5'
9447 5' -48.3 NC_002531.1 + 43319 0.67 0.996138
Target:  5'- --uGGUUAGAAUCCugCUAuCCAAGCa -3'
miRNA:   3'- ccuUCGGUUUUAGGugGGU-GGUUUGg -5'
9447 5' -48.3 NC_002531.1 + 116745 0.68 0.992831
Target:  5'- cGGccGCCAAAAcaCCAUCCAC-AGACUa -3'
miRNA:   3'- -CCuuCGGUUUUa-GGUGGGUGgUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 82897 0.66 0.999084
Target:  5'- cGGAGGCauucuugCCcauaGCCCACC--ACCg -3'
miRNA:   3'- -CCUUCGguuuua-GG----UGGGUGGuuUGG- -5'
9447 5' -48.3 NC_002531.1 + 69494 0.66 0.998684
Target:  5'- aGGcGGCCugcAUUCACCaagACCAcGCCa -3'
miRNA:   3'- -CCuUCGGuuuUAGGUGGg--UGGUuUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.