Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9451 | 5' | -52.7 | NC_002531.1 | + | 129565 | 0.66 | 0.958147 |
Target: 5'- aCCUAAAGacgGGCCugcaGCCAAGAaccCACCAa- -3' miRNA: 3'- -GGGUUUCg--CCGG----CGGUUUU---GUGGUag -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 124586 | 0.66 | 0.961857 |
Target: 5'- gCCCAgcAGGUGGCUuaccuGCCAAAcguCuCCAUCc -3' miRNA: 3'- -GGGU--UUCGCCGG-----CGGUUUu--GuGGUAG- -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 124125 | 0.72 | 0.727092 |
Target: 5'- gCCCuuauguuAGUGGCUGCUu--GCACCAUUa -3' miRNA: 3'- -GGGuu-----UCGCCGGCGGuuuUGUGGUAG- -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 123331 | 0.66 | 0.958147 |
Target: 5'- gCCCGGGGUgGGUCGCUuuGACuuuCCAcUCg -3' miRNA: 3'- -GGGUUUCG-CCGGCGGuuUUGu--GGU-AG- -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 122668 | 0.71 | 0.805129 |
Target: 5'- cCCUAAAaUGGCCGCCcuguuCGCUAUCa -3' miRNA: 3'- -GGGUUUcGCCGGCGGuuuu-GUGGUAG- -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 122182 | 0.67 | 0.945562 |
Target: 5'- gCUAGacAGgGGCUGCUGAAAgACUAUCu -3' miRNA: 3'- gGGUU--UCgCCGGCGGUUUUgUGGUAG- -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 121812 | 0.66 | 0.969814 |
Target: 5'- cCCCAAcAGCcGCCaCCAGAggcucuguauaucccACGCCAUUg -3' miRNA: 3'- -GGGUU-UCGcCGGcGGUUU---------------UGUGGUAG- -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 120495 | 0.66 | 0.968578 |
Target: 5'- gCCCAAAGCcauauauuauGuGCUGUCGGAGCGCUg-- -3' miRNA: 3'- -GGGUUUCG----------C-CGGCGGUUUUGUGGuag -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 120120 | 0.69 | 0.877733 |
Target: 5'- gCCAGGGCGaG-UGCCcaguccugaucuuaGAAGCACCAUCu -3' miRNA: 3'- gGGUUUCGC-CgGCGG--------------UUUUGUGGUAG- -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 118365 | 0.66 | 0.961857 |
Target: 5'- aCCAAAGgGGCCagaaggagaauGCCAAAguGgACCAa- -3' miRNA: 3'- gGGUUUCgCCGG-----------CGGUUU--UgUGGUag -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 116753 | 1.11 | 0.003519 |
Target: 5'- cCCCAAAGCGGCCGCCAAAACACCAUCc -3' miRNA: 3'- -GGGUUUCGCCGGCGGUUUUGUGGUAG- -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 113309 | 0.66 | 0.961857 |
Target: 5'- gCUGGuGCGGCUGCCAcucaaacAGCACCcaAUCg -3' miRNA: 3'- gGGUUuCGCCGGCGGUu------UUGUGG--UAG- -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 109442 | 0.66 | 0.971602 |
Target: 5'- aCCAAAGUaGGCC-CCAuuguAACACUuuAUCu -3' miRNA: 3'- gGGUUUCG-CCGGcGGUu---UUGUGG--UAG- -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 105429 | 0.7 | 0.840431 |
Target: 5'- aUCAGuuUGGCCGCCAGGAUAgCCAUg -3' miRNA: 3'- gGGUUucGCCGGCGGUUUUGU-GGUAg -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 104006 | 0.68 | 0.907343 |
Target: 5'- cCCCGGGGCaGGCCcUCAAAauGCACCu-- -3' miRNA: 3'- -GGGUUUCG-CCGGcGGUUU--UGUGGuag -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 102721 | 0.7 | 0.81423 |
Target: 5'- uCUCAGGGCGGCUGaCCAAAaaagcguuuuuACGCCu-- -3' miRNA: 3'- -GGGUUUCGCCGGC-GGUUU-----------UGUGGuag -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 96959 | 0.7 | 0.823153 |
Target: 5'- aCCGugAGGCGGUgGCCcuguACACCAUa -3' miRNA: 3'- gGGU--UUCGCCGgCGGuuu-UGUGGUAg -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 95461 | 0.69 | 0.894135 |
Target: 5'- cCCCAGAGCccuCCGCCAAcuGAC-CCAg- -3' miRNA: 3'- -GGGUUUCGcc-GGCGGUU--UUGuGGUag -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 91366 | 0.71 | 0.79586 |
Target: 5'- aCCAAcuCGGCCcUCAAAAuCACCAUCu -3' miRNA: 3'- gGGUUucGCCGGcGGUUUU-GUGGUAG- -5' |
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9451 | 5' | -52.7 | NC_002531.1 | + | 84826 | 0.69 | 0.88645 |
Target: 5'- gCCCGAAGgacaGcGCCGCCAaaccacaGAGCACCc-- -3' miRNA: 3'- -GGGUUUCg---C-CGGCGGU-------UUUGUGGuag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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