miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9451 5' -52.7 NC_002531.1 + 109442 0.66 0.971602
Target:  5'- aCCAAAGUaGGCC-CCAuuguAACACUuuAUCu -3'
miRNA:   3'- gGGUUUCG-CCGGcGGUu---UUGUGG--UAG- -5'
9451 5' -52.7 NC_002531.1 + 91366 0.71 0.79586
Target:  5'- aCCAAcuCGGCCcUCAAAAuCACCAUCu -3'
miRNA:   3'- gGGUUucGCCGGcGGUUUU-GUGGUAG- -5'
9451 5' -52.7 NC_002531.1 + 83045 0.69 0.894135
Target:  5'- gUCCGugaUGGCCGCCAGGu--CCAUCa -3'
miRNA:   3'- -GGGUuucGCCGGCGGUUUuguGGUAG- -5'
9451 5' -52.7 NC_002531.1 + 104006 0.68 0.907343
Target:  5'- cCCCGGGGCaGGCCcUCAAAauGCACCu-- -3'
miRNA:   3'- -GGGUUUCG-CCGGcGGUUU--UGUGGuag -5'
9451 5' -52.7 NC_002531.1 + 36162 0.66 0.954198
Target:  5'- gCCCcc-GUGGCCGgCAAcg-GCCAUCa -3'
miRNA:   3'- -GGGuuuCGCCGGCgGUUuugUGGUAG- -5'
9451 5' -52.7 NC_002531.1 + 129565 0.66 0.958147
Target:  5'- aCCUAAAGacgGGCCugcaGCCAAGAaccCACCAa- -3'
miRNA:   3'- -GGGUUUCg--CCGG----CGGUUUU---GUGGUag -5'
9451 5' -52.7 NC_002531.1 + 116753 1.11 0.003519
Target:  5'- cCCCAAAGCGGCCGCCAAAACACCAUCc -3'
miRNA:   3'- -GGGUUUCGCCGGCGGUUUUGUGGUAG- -5'
9451 5' -52.7 NC_002531.1 + 58122 0.73 0.696095
Target:  5'- uUCCAAAGCGGuCCcCCAcGGACACCGc- -3'
miRNA:   3'- -GGGUUUCGCC-GGcGGU-UUUGUGGUag -5'
9451 5' -52.7 NC_002531.1 + 122668 0.71 0.805129
Target:  5'- cCCUAAAaUGGCCGCCcuguuCGCUAUCa -3'
miRNA:   3'- -GGGUUUcGCCGGCGGuuuu-GUGGUAG- -5'
9451 5' -52.7 NC_002531.1 + 34248 0.67 0.935921
Target:  5'- cUCCA---CGGCCauacccccgGCCAGAGCACCAc- -3'
miRNA:   3'- -GGGUuucGCCGG---------CGGUUUUGUGGUag -5'
9451 5' -52.7 NC_002531.1 + 118365 0.66 0.961857
Target:  5'- aCCAAAGgGGCCagaaggagaauGCCAAAguGgACCAa- -3'
miRNA:   3'- gGGUUUCgCCGG-----------CGGUUU--UgUGGUag -5'
9451 5' -52.7 NC_002531.1 + 69626 0.73 0.664581
Target:  5'- aCCGGAGCGacucuucuaGCCGUgAGAGCACCAc- -3'
miRNA:   3'- gGGUUUCGC---------CGGCGgUUUUGUGGUag -5'
9451 5' -52.7 NC_002531.1 + 124586 0.66 0.961857
Target:  5'- gCCCAgcAGGUGGCUuaccuGCCAAAcguCuCCAUCc -3'
miRNA:   3'- -GGGU--UUCGCCGG-----CGGUUUu--GuGGUAG- -5'
9451 5' -52.7 NC_002531.1 + 35981 0.69 0.887161
Target:  5'- cCCCAaaaAAGCaGGCagaaaGCCGc--CACCAUCa -3'
miRNA:   3'- -GGGU---UUCG-CCGg----CGGUuuuGUGGUAG- -5'
9451 5' -52.7 NC_002531.1 + 12226 0.8 0.319396
Target:  5'- aCCCAGcuCGGCCGCCAcagcgucuauCACCAUCa -3'
miRNA:   3'- -GGGUUucGCCGGCGGUuuu-------GUGGUAG- -5'
9451 5' -52.7 NC_002531.1 + 123331 0.66 0.958147
Target:  5'- gCCCGGGGUgGGUCGCUuuGACuuuCCAcUCg -3'
miRNA:   3'- -GGGUUUCG-CCGGCGGuuUUGu--GGU-AG- -5'
9451 5' -52.7 NC_002531.1 + 34823 0.72 0.746331
Target:  5'- gCCAGgcAGCGGguaucucaCCGCCAcauauuuaaaggcGAGCGCCGUCc -3'
miRNA:   3'- gGGUU--UCGCC--------GGCGGU-------------UUUGUGGUAG- -5'
9451 5' -52.7 NC_002531.1 + 122182 0.67 0.945562
Target:  5'- gCUAGacAGgGGCUGCUGAAAgACUAUCu -3'
miRNA:   3'- gGGUU--UCgCCGGCGGUUUUgUGGUAG- -5'
9451 5' -52.7 NC_002531.1 + 68713 0.67 0.945562
Target:  5'- gCCCAucAGCgGGCUGCUGGAcuACGCC-UCc -3'
miRNA:   3'- -GGGUu-UCG-CCGGCGGUUU--UGUGGuAG- -5'
9451 5' -52.7 NC_002531.1 + 82986 0.67 0.935921
Target:  5'- aCCGGAGCGaGCUGUCucacAGGCACUAc- -3'
miRNA:   3'- gGGUUUCGC-CGGCGGu---UUUGUGGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.