miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9588 3' -53 NC_002577.1 + 130237 1.15 0.003119
Target:  5'- gGCCCUCGAAACGUCAUCCGGAACGCCg -3'
miRNA:   3'- -CGGGAGCUUUGCAGUAGGCCUUGCGG- -5'
9588 3' -53 NC_002577.1 + 3377 1.15 0.003119
Target:  5'- gGCCCUCGAAACGUCAUCCGGAACGCCg -3'
miRNA:   3'- -CGGGAGCUUUGCAGUAGGCCUUGCGG- -5'
9588 3' -53 NC_002577.1 + 108605 0.78 0.493258
Target:  5'- cGCCC-CGAGACGUUggAUCCGGGucCGUCa -3'
miRNA:   3'- -CGGGaGCUUUGCAG--UAGGCCUu-GCGG- -5'
9588 3' -53 NC_002577.1 + 122944 0.76 0.643215
Target:  5'- uCCCUCGAcguccGACGgu-UCCGG-ACGCCg -3'
miRNA:   3'- cGGGAGCU-----UUGCaguAGGCCuUGCGG- -5'
9588 3' -53 NC_002577.1 + 136969 0.76 0.643215
Target:  5'- gGCCCUCG-GACGU--UCCGGAagAgGCCg -3'
miRNA:   3'- -CGGGAGCuUUGCAguAGGCCU--UgCGG- -5'
9588 3' -53 NC_002577.1 + 10670 0.76 0.643215
Target:  5'- uCCCUCGAcguccGACGgu-UCCGG-ACGCCg -3'
miRNA:   3'- cGGGAGCU-----UUGCaguAGGCCuUGCGG- -5'
9588 3' -53 NC_002577.1 + 160368 0.76 0.643215
Target:  5'- gGCCCUCG-GACGU--UCCGGAagAgGCCg -3'
miRNA:   3'- -CGGGAGCuUUGCAguAGGCCU--UgCGG- -5'
9588 3' -53 NC_002577.1 + 10884 0.75 0.673747
Target:  5'- cGCCUUCGGGccgcgacccucGCGgCGUCCGGAAcCGUCg -3'
miRNA:   3'- -CGGGAGCUU-----------UGCaGUAGGCCUU-GCGG- -5'
9588 3' -53 NC_002577.1 + 107286 0.75 0.683867
Target:  5'- gGUCCUCGggGCGU--UCCG--ACGCCa -3'
miRNA:   3'- -CGGGAGCuuUGCAguAGGCcuUGCGG- -5'
9588 3' -53 NC_002577.1 + 121684 0.75 0.693946
Target:  5'- cGCCCUCc-GGCGUCguucucuccggcGUCCGGGuCGCCc -3'
miRNA:   3'- -CGGGAGcuUUGCAG------------UAGGCCUuGCGG- -5'
9588 3' -53 NC_002577.1 + 11930 0.75 0.693946
Target:  5'- cGCCCUCc-GGCGUCguucucuccggcGUCCGGGuCGCCc -3'
miRNA:   3'- -CGGGAGcuUUGCAG------------UAGGCCUuGCGG- -5'
9588 3' -53 NC_002577.1 + 17868 0.72 0.808288
Target:  5'- uGCCCgaCGAucacaacuuuGACGUCGggCGGAGCGCa -3'
miRNA:   3'- -CGGGa-GCU----------UUGCAGUagGCCUUGCGg -5'
9588 3' -53 NC_002577.1 + 160688 0.72 0.833895
Target:  5'- aGCCgUUGgcGCGUUcUCCGGAG-GCCa -3'
miRNA:   3'- -CGGgAGCuuUGCAGuAGGCCUUgCGG- -5'
9588 3' -53 NC_002577.1 + 136649 0.72 0.833895
Target:  5'- aGCCgUUGgcGCGUUcUCCGGAG-GCCa -3'
miRNA:   3'- -CGGgAGCuuUGCAGuAGGCCUUgCGG- -5'
9588 3' -53 NC_002577.1 + 158187 0.71 0.850067
Target:  5'- gGCgCUgCGGAACGgaaAUCCGGAAC-CCg -3'
miRNA:   3'- -CGgGA-GCUUUGCag-UAGGCCUUGcGG- -5'
9588 3' -53 NC_002577.1 + 139151 0.71 0.850067
Target:  5'- gGCgCUgCGGAACGgaaAUCCGGAAC-CCg -3'
miRNA:   3'- -CGgGA-GCUUUGCag-UAGGCCUUGcGG- -5'
9588 3' -53 NC_002577.1 + 16200 0.71 0.865453
Target:  5'- uGCCCcacuaggcggggUCGAGACaUCGUCCGauuCGCCa -3'
miRNA:   3'- -CGGG------------AGCUUUGcAGUAGGCcuuGCGG- -5'
9588 3' -53 NC_002577.1 + 41168 0.71 0.872836
Target:  5'- uGgCCUCGu-ACGUgcaGUCCGGAguggcaccgGCGCCa -3'
miRNA:   3'- -CgGGAGCuuUGCAg--UAGGCCU---------UGCGG- -5'
9588 3' -53 NC_002577.1 + 4804 0.71 0.880004
Target:  5'- aCCCUCGGAGgGgggCAUgaGGAcgGCGCCc -3'
miRNA:   3'- cGGGAGCUUUgCa--GUAggCCU--UGCGG- -5'
9588 3' -53 NC_002577.1 + 128810 0.71 0.880004
Target:  5'- aCCCUCGGAGgGgggCAUgaGGAcgGCGCCc -3'
miRNA:   3'- cGGGAGCUUUgCa--GUAggCCU--UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.