miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9588 3' -53 NC_002577.1 + 3377 1.15 0.003119
Target:  5'- gGCCCUCGAAACGUCAUCCGGAACGCCg -3'
miRNA:   3'- -CGGGAGCUUUGCAGUAGGCCUUGCGG- -5'
9588 3' -53 NC_002577.1 + 4622 0.67 0.966566
Target:  5'- cGUCC-CGuc-CGaCGUuuGGAACGCCg -3'
miRNA:   3'- -CGGGaGCuuuGCaGUAggCCUUGCGG- -5'
9588 3' -53 NC_002577.1 + 4804 0.71 0.880004
Target:  5'- aCCCUCGGAGgGgggCAUgaGGAcgGCGCCc -3'
miRNA:   3'- cGGGAGCUUUgCa--GUAggCCU--UGCGG- -5'
9588 3' -53 NC_002577.1 + 7697 0.66 0.988721
Target:  5'- cCCCUCGGcccGCGg-AUUCGGAucGCGCUc -3'
miRNA:   3'- cGGGAGCUu--UGCagUAGGCCU--UGCGG- -5'
9588 3' -53 NC_002577.1 + 9788 0.66 0.988721
Target:  5'- cGCaCCgCGGGcucCGUCAaaCGGAACGCUc -3'
miRNA:   3'- -CG-GGaGCUUu--GCAGUagGCCUUGCGG- -5'
9588 3' -53 NC_002577.1 + 10670 0.76 0.643215
Target:  5'- uCCCUCGAcguccGACGgu-UCCGG-ACGCCg -3'
miRNA:   3'- cGGGAGCU-----UUGCaguAGGCCuUGCGG- -5'
9588 3' -53 NC_002577.1 + 10884 0.75 0.673747
Target:  5'- cGCCUUCGGGccgcgacccucGCGgCGUCCGGAAcCGUCg -3'
miRNA:   3'- -CGGGAGCUU-----------UGCaGUAGGCCUU-GCGG- -5'
9588 3' -53 NC_002577.1 + 11264 0.67 0.969614
Target:  5'- gGCCCggucauaaGAAGCGgaggCG-CCGGAucuccgcuuagaGCGCCg -3'
miRNA:   3'- -CGGGag------CUUUGCa---GUaGGCCU------------UGCGG- -5'
9588 3' -53 NC_002577.1 + 11374 0.66 0.979836
Target:  5'- aGCCCcgUCgGGAGCGaUC--CCGGAucggACGCCg -3'
miRNA:   3'- -CGGG--AG-CUUUGC-AGuaGGCCU----UGCGG- -5'
9588 3' -53 NC_002577.1 + 11594 0.66 0.988721
Target:  5'- gGCCCggCGGAACGcgAUgCGGcgggggaaaaGGCGCCg -3'
miRNA:   3'- -CGGGa-GCUUUGCagUAgGCC----------UUGCGG- -5'
9588 3' -53 NC_002577.1 + 11858 0.66 0.988721
Target:  5'- uCCCUCu---CGgCGUCCGGAgggGCGCg -3'
miRNA:   3'- cGGGAGcuuuGCaGUAGGCCU---UGCGg -5'
9588 3' -53 NC_002577.1 + 11930 0.75 0.693946
Target:  5'- cGCCCUCc-GGCGUCguucucuccggcGUCCGGGuCGCCc -3'
miRNA:   3'- -CGGGAGcuUUGCAG------------UAGGCCUuGCGG- -5'
9588 3' -53 NC_002577.1 + 11989 0.7 0.918272
Target:  5'- cGCCCgCGu--CGUCGcCCGGGucguCGCCc -3'
miRNA:   3'- -CGGGaGCuuuGCAGUaGGCCUu---GCGG- -5'
9588 3' -53 NC_002577.1 + 12037 0.69 0.943699
Target:  5'- cGCCCggGu--CGUCGcCCGGGucgGCGCCc -3'
miRNA:   3'- -CGGGagCuuuGCAGUaGGCCU---UGCGG- -5'
9588 3' -53 NC_002577.1 + 12080 0.67 0.972459
Target:  5'- uGCgCCUCGuccGCGUCcgcgcCCGGGucguCGCCc -3'
miRNA:   3'- -CG-GGAGCuu-UGCAGua---GGCCUu---GCGG- -5'
9588 3' -53 NC_002577.1 + 16200 0.71 0.865453
Target:  5'- uGCCCcacuaggcggggUCGAGACaUCGUCCGauuCGCCa -3'
miRNA:   3'- -CGGG------------AGCUUUGcAGUAGGCcuuGCGG- -5'
9588 3' -53 NC_002577.1 + 17868 0.72 0.808288
Target:  5'- uGCCCgaCGAucacaacuuuGACGUCGggCGGAGCGCa -3'
miRNA:   3'- -CGGGa-GCU----------UUGCAGUagGCCUUGCGg -5'
9588 3' -53 NC_002577.1 + 20613 0.69 0.939087
Target:  5'- uUUgUCGAAACGguagacgaUCAggaacUCCGGAugGCCg -3'
miRNA:   3'- cGGgAGCUUUGC--------AGU-----AGGCCUugCGG- -5'
9588 3' -53 NC_002577.1 + 33307 0.7 0.912475
Target:  5'- uGCCCUCGcAGCG-CAcgCGGAauccuuACGCCu -3'
miRNA:   3'- -CGGGAGCuUUGCaGUagGCCU------UGCGG- -5'
9588 3' -53 NC_002577.1 + 33539 0.69 0.934239
Target:  5'- uGCCC--GAAGCGUagucUUCGGAACGCg -3'
miRNA:   3'- -CGGGagCUUUGCAgu--AGGCCUUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.