miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9588 3' -53 NC_002577.1 + 161108 0.67 0.972459
Target:  5'- -aCCUCGGuuuuGCGggCGUCCuGGAacaccugcaACGCCu -3'
miRNA:   3'- cgGGAGCUu---UGCa-GUAGG-CCU---------UGCGG- -5'
9588 3' -53 NC_002577.1 + 160688 0.72 0.833895
Target:  5'- aGCCgUUGgcGCGUUcUCCGGAG-GCCa -3'
miRNA:   3'- -CGGgAGCuuUGCAGuAGGCCUUgCGG- -5'
9588 3' -53 NC_002577.1 + 160521 0.68 0.952223
Target:  5'- gGUUCUCGAcGGCGUUGUCC---GCGCCg -3'
miRNA:   3'- -CGGGAGCU-UUGCAGUAGGccuUGCGG- -5'
9588 3' -53 NC_002577.1 + 160434 0.67 0.975106
Target:  5'- cCCCU-GAAGCGUg--CCGcGACGCCg -3'
miRNA:   3'- cGGGAgCUUUGCAguaGGCcUUGCGG- -5'
9588 3' -53 NC_002577.1 + 160368 0.76 0.643215
Target:  5'- gGCCCUCG-GACGU--UCCGGAagAgGCCg -3'
miRNA:   3'- -CGGGAGCuUUGCAguAGGCCU--UgCGG- -5'
9588 3' -53 NC_002577.1 + 160345 0.7 0.886268
Target:  5'- cGCCgUCGAGaacccGCGUCcgcguuugggaagGUcCCGGAcagGCGCCg -3'
miRNA:   3'- -CGGgAGCUU-----UGCAG-------------UA-GGCCU---UGCGG- -5'
9588 3' -53 NC_002577.1 + 160171 0.68 0.952223
Target:  5'- cGCCgaCGcgGCcUCuUCCGGAACGUCc -3'
miRNA:   3'- -CGGgaGCuuUGcAGuAGGCCUUGCGG- -5'
9588 3' -53 NC_002577.1 + 159988 0.66 0.979836
Target:  5'- cGUCCUCGcaAGACGacagCAuuUCCGcGAccGCGCCc -3'
miRNA:   3'- -CGGGAGC--UUUGCa---GU--AGGC-CU--UGCGG- -5'
9588 3' -53 NC_002577.1 + 159216 0.66 0.981933
Target:  5'- uGCUCUacuucaGGGAUGcC--CCGGAGCGCCu -3'
miRNA:   3'- -CGGGAg-----CUUUGCaGuaGGCCUUGCGG- -5'
9588 3' -53 NC_002577.1 + 159119 0.66 0.985462
Target:  5'- cCUCUUGGucGAgGUCAUCCGGcgguggcGGCGCa -3'
miRNA:   3'- cGGGAGCU--UUgCAGUAGGCC-------UUGCGg -5'
9588 3' -53 NC_002577.1 + 158752 0.68 0.963307
Target:  5'- cGCCCucuucaUCGGAACaGUCGUCUGc--CGCCc -3'
miRNA:   3'- -CGGG------AGCUUUG-CAGUAGGCcuuGCGG- -5'
9588 3' -53 NC_002577.1 + 158396 0.68 0.955759
Target:  5'- aGCCg-UGggGCGUCccgccggguUCCGGAuuuccguuccgcaGCGCCa -3'
miRNA:   3'- -CGGgaGCuuUGCAGu--------AGGCCU-------------UGCGG- -5'
9588 3' -53 NC_002577.1 + 158187 0.71 0.850067
Target:  5'- gGCgCUgCGGAACGgaaAUCCGGAAC-CCg -3'
miRNA:   3'- -CGgGA-GCUUUGCag-UAGGCCUUGcGG- -5'
9588 3' -53 NC_002577.1 + 155444 0.66 0.983863
Target:  5'- cGCCCUCGGGAgagUGcUCGcCCGGGG-GCUa -3'
miRNA:   3'- -CGGGAGCUUU---GC-AGUaGGCCUUgCGG- -5'
9588 3' -53 NC_002577.1 + 141893 0.66 0.983863
Target:  5'- cGCCCUCGGGAgagUGcUCGcCCGGGG-GCUa -3'
miRNA:   3'- -CGGGAGCUUU---GC-AGUaGGCCUUgCGG- -5'
9588 3' -53 NC_002577.1 + 139151 0.71 0.850067
Target:  5'- gGCgCUgCGGAACGgaaAUCCGGAAC-CCg -3'
miRNA:   3'- -CGgGA-GCUUUGCag-UAGGCCUUGcGG- -5'
9588 3' -53 NC_002577.1 + 138941 0.68 0.955759
Target:  5'- aGCCg-UGggGCGUCccgccggguUCCGGAuuuccguuccgcaGCGCCa -3'
miRNA:   3'- -CGGgaGCuuUGCAGu--------AGGCCU-------------UGCGG- -5'
9588 3' -53 NC_002577.1 + 138585 0.68 0.963307
Target:  5'- cGCCCucuucaUCGGAACaGUCGUCUGc--CGCCc -3'
miRNA:   3'- -CGGG------AGCUUUG-CAGUAGGCcuuGCGG- -5'
9588 3' -53 NC_002577.1 + 138219 0.66 0.985462
Target:  5'- cCUCUUGGucGAgGUCAUCCGGcgguggcGGCGCa -3'
miRNA:   3'- cGGGAGCU--UUgCAGUAGGCC-------UUGCGg -5'
9588 3' -53 NC_002577.1 + 138122 0.66 0.981933
Target:  5'- uGCUCUacuucaGGGAUGcC--CCGGAGCGCCu -3'
miRNA:   3'- -CGGGAg-----CUUUGCaGuaGGCCUUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.