miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9588 3' -53 NC_002577.1 + 130237 1.15 0.003119
Target:  5'- gGCCCUCGAAACGUCAUCCGGAACGCCg -3'
miRNA:   3'- -CGGGAGCUUUGCAGUAGGCCUUGCGG- -5'
9588 3' -53 NC_002577.1 + 136816 0.68 0.952223
Target:  5'- gGUUCUCGAcGGCGUUGUCC---GCGCCg -3'
miRNA:   3'- -CGGGAGCU-UUGCAGUAGGccuUGCGG- -5'
9588 3' -53 NC_002577.1 + 160171 0.68 0.952223
Target:  5'- cGCCgaCGcgGCcUCuUCCGGAACGUCc -3'
miRNA:   3'- -CGGgaGCuuUGcAGuAGGCCUUGCGG- -5'
9588 3' -53 NC_002577.1 + 123825 0.66 0.988721
Target:  5'- cGCaCCgCGGGcucCGUCAaaCGGAACGCUc -3'
miRNA:   3'- -CG-GGaGCUUu--GCAGUagGCCUUGCGG- -5'
9588 3' -53 NC_002577.1 + 121684 0.75 0.693946
Target:  5'- cGCCCUCc-GGCGUCguucucuccggcGUCCGGGuCGCCc -3'
miRNA:   3'- -CGGGAGcuUUGCAG------------UAGGCCUuGCGG- -5'
9588 3' -53 NC_002577.1 + 160688 0.72 0.833895
Target:  5'- aGCCgUUGgcGCGUUcUCCGGAG-GCCa -3'
miRNA:   3'- -CGGgAGCuuUGCAGuAGGCCUUgCGG- -5'
9588 3' -53 NC_002577.1 + 41168 0.71 0.872836
Target:  5'- uGgCCUCGu-ACGUgcaGUCCGGAguggcaccgGCGCCa -3'
miRNA:   3'- -CgGGAGCuuUGCAg--UAGGCCU---------UGCGG- -5'
9588 3' -53 NC_002577.1 + 4804 0.71 0.880004
Target:  5'- aCCCUCGGAGgGgggCAUgaGGAcgGCGCCc -3'
miRNA:   3'- cGGGAGCUUUgCa--GUAggCCU--UGCGG- -5'
9588 3' -53 NC_002577.1 + 112832 0.7 0.918272
Target:  5'- cGCCUgcuucCGuuuuGCGUgAUaCCGGAGCGCUg -3'
miRNA:   3'- -CGGGa----GCuu--UGCAgUA-GGCCUUGCGG- -5'
9588 3' -53 NC_002577.1 + 104690 0.68 0.948076
Target:  5'- cGCCUgcgUGAcgauccgcGGCGUCGUCCGcGcacGCGCCc -3'
miRNA:   3'- -CGGGa--GCU--------UUGCAGUAGGC-Cu--UGCGG- -5'
9588 3' -53 NC_002577.1 + 90141 0.69 0.929155
Target:  5'- uCCCUCGAAGCGaauagaaAUuuGGAcacCGCCu -3'
miRNA:   3'- cGGGAGCUUUGCag-----UAggCCUu--GCGG- -5'
9588 3' -53 NC_002577.1 + 122730 0.7 0.900175
Target:  5'- cGCCUUCGGGccgcgacccucGCGg-GUCCGGAAcCGUCg -3'
miRNA:   3'- -CGGGAGCUU-----------UGCagUAGGCCUU-GCGG- -5'
9588 3' -53 NC_002577.1 + 10670 0.76 0.643215
Target:  5'- uCCCUCGAcguccGACGgu-UCCGG-ACGCCg -3'
miRNA:   3'- cGGGAGCU-----UUGCaguAGGCCuUGCGG- -5'
9588 3' -53 NC_002577.1 + 121649 0.69 0.943699
Target:  5'- cGCCCggGu--CGUCGcCCGGGuccGCGCCc -3'
miRNA:   3'- -CGGGagCuuuGCAGUaGGCCU---UGCGG- -5'
9588 3' -53 NC_002577.1 + 136969 0.76 0.643215
Target:  5'- gGCCCUCG-GACGU--UCCGGAagAgGCCg -3'
miRNA:   3'- -CGGGAGCuUUGCAguAGGCCU--UgCGG- -5'
9588 3' -53 NC_002577.1 + 160345 0.7 0.886268
Target:  5'- cGCCgUCGAGaacccGCGUCcgcguuugggaagGUcCCGGAcagGCGCCg -3'
miRNA:   3'- -CGGgAGCUU-----UGCAG-------------UA-GGCCU---UGCGG- -5'
9588 3' -53 NC_002577.1 + 100830 0.68 0.948076
Target:  5'- cGCCCaUUGAGuauCGUCGcuucgauaaUCaGGGACGCCc -3'
miRNA:   3'- -CGGG-AGCUUu--GCAGU---------AGgCCUUGCGG- -5'
9588 3' -53 NC_002577.1 + 75861 0.68 0.952223
Target:  5'- cGCgCUCGAuuCGUCcgugCUGGAGCGaUCg -3'
miRNA:   3'- -CGgGAGCUuuGCAGua--GGCCUUGC-GG- -5'
9588 3' -53 NC_002577.1 + 107286 0.75 0.683867
Target:  5'- gGUCCUCGggGCGU--UCCG--ACGCCa -3'
miRNA:   3'- -CGGGAGCuuUGCAguAGGCcuUGCGG- -5'
9588 3' -53 NC_002577.1 + 158187 0.71 0.850067
Target:  5'- gGCgCUgCGGAACGgaaAUCCGGAAC-CCg -3'
miRNA:   3'- -CGgGA-GCUUUGCag-UAGGCCUUGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.