miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9588 3' -53 NC_002577.1 + 158752 0.68 0.963307
Target:  5'- cGCCCucuucaUCGGAACaGUCGUCUGc--CGCCc -3'
miRNA:   3'- -CGGG------AGCUUUG-CAGUAGGCcuuGCGG- -5'
9588 3' -53 NC_002577.1 + 160171 0.68 0.952223
Target:  5'- cGCCgaCGcgGCcUCuUCCGGAACGUCc -3'
miRNA:   3'- -CGGgaGCuuUGcAGuAGGCCUUGCGG- -5'
9588 3' -53 NC_002577.1 + 122730 0.7 0.900175
Target:  5'- cGCCUUCGGGccgcgacccucGCGg-GUCCGGAAcCGUCg -3'
miRNA:   3'- -CGGGAGCUU-----------UGCagUAGGCCUU-GCGG- -5'
9588 3' -53 NC_002577.1 + 107286 0.75 0.683867
Target:  5'- gGUCCUCGggGCGU--UCCG--ACGCCa -3'
miRNA:   3'- -CGGGAGCuuUGCAguAGGCcuUGCGG- -5'
9588 3' -53 NC_002577.1 + 138122 0.66 0.981933
Target:  5'- uGCUCUacuucaGGGAUGcC--CCGGAGCGCCu -3'
miRNA:   3'- -CGGGAg-----CUUUGCaGuaGGCCUUGCGG- -5'
9588 3' -53 NC_002577.1 + 161108 0.67 0.972459
Target:  5'- -aCCUCGGuuuuGCGggCGUCCuGGAacaccugcaACGCCu -3'
miRNA:   3'- cgGGAGCUu---UGCa-GUAGG-CCU---------UGCGG- -5'
9588 3' -53 NC_002577.1 + 136816 0.68 0.952223
Target:  5'- gGUUCUCGAcGGCGUUGUCC---GCGCCg -3'
miRNA:   3'- -CGGGAGCU-UUGCAGUAGGccuUGCGG- -5'
9588 3' -53 NC_002577.1 + 136969 0.76 0.643215
Target:  5'- gGCCCUCG-GACGU--UCCGGAagAgGCCg -3'
miRNA:   3'- -CGGGAGCuUUGCAguAGGCCU--UgCGG- -5'
9588 3' -53 NC_002577.1 + 61871 0.67 0.972459
Target:  5'- cGCUCUCGuacauuuuGCGUC-UCCGaGcAACGUCa -3'
miRNA:   3'- -CGGGAGCuu------UGCAGuAGGC-C-UUGCGG- -5'
9588 3' -53 NC_002577.1 + 10670 0.76 0.643215
Target:  5'- uCCCUCGAcguccGACGgu-UCCGG-ACGCCg -3'
miRNA:   3'- cGGGAGCU-----UUGCaguAGGCCuUGCGG- -5'
9588 3' -53 NC_002577.1 + 75861 0.68 0.952223
Target:  5'- cGCgCUCGAuuCGUCcgugCUGGAGCGaUCg -3'
miRNA:   3'- -CGgGAGCUuuGCAGua--GGCCUUGC-GG- -5'
9588 3' -53 NC_002577.1 + 4622 0.67 0.966566
Target:  5'- cGUCC-CGuc-CGaCGUuuGGAACGCCg -3'
miRNA:   3'- -CGGGaGCuuuGCaGUAggCCUUGCGG- -5'
9588 3' -53 NC_002577.1 + 121649 0.69 0.943699
Target:  5'- cGCCCggGu--CGUCGcCCGGGuccGCGCCc -3'
miRNA:   3'- -CGGGagCuuuGCAGUaGGCCU---UGCGG- -5'
9588 3' -53 NC_002577.1 + 112832 0.7 0.918272
Target:  5'- cGCCUgcuucCGuuuuGCGUgAUaCCGGAGCGCUg -3'
miRNA:   3'- -CGGGa----GCuu--UGCAgUA-GGCCUUGCGG- -5'
9588 3' -53 NC_002577.1 + 41168 0.71 0.872836
Target:  5'- uGgCCUCGu-ACGUgcaGUCCGGAguggcaccgGCGCCa -3'
miRNA:   3'- -CgGGAGCuuUGCAg--UAGGCCU---------UGCGG- -5'
9588 3' -53 NC_002577.1 + 121684 0.75 0.693946
Target:  5'- cGCCCUCc-GGCGUCguucucuccggcGUCCGGGuCGCCc -3'
miRNA:   3'- -CGGGAGcuUUGCAG------------UAGGCCUuGCGG- -5'
9588 3' -53 NC_002577.1 + 11594 0.66 0.988721
Target:  5'- gGCCCggCGGAACGcgAUgCGGcgggggaaaaGGCGCCg -3'
miRNA:   3'- -CGGGa-GCUUUGCagUAgGCC----------UUGCGG- -5'
9588 3' -53 NC_002577.1 + 141893 0.66 0.983863
Target:  5'- cGCCCUCGGGAgagUGcUCGcCCGGGG-GCUa -3'
miRNA:   3'- -CGGGAGCUUU---GC-AGUaGGCCUUgCGG- -5'
9588 3' -53 NC_002577.1 + 11374 0.66 0.979836
Target:  5'- aGCCCcgUCgGGAGCGaUC--CCGGAucggACGCCg -3'
miRNA:   3'- -CGGG--AG-CUUUGC-AGuaGGCCU----UGCGG- -5'
9588 3' -53 NC_002577.1 + 160434 0.67 0.975106
Target:  5'- cCCCU-GAAGCGUg--CCGcGACGCCg -3'
miRNA:   3'- cGGGAgCUUUGCAguaGGCcUUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.