Results 21 - 40 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9588 | 3' | -53 | NC_002577.1 | + | 160345 | 0.7 | 0.886268 |
Target: 5'- cGCCgUCGAGaacccGCGUCcgcguuugggaagGUcCCGGAcagGCGCCg -3' miRNA: 3'- -CGGgAGCUU-----UGCAG-------------UA-GGCCU---UGCGG- -5' |
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9588 | 3' | -53 | NC_002577.1 | + | 136993 | 0.7 | 0.886268 |
Target: 5'- cGCCgUCGAGaacccGCGUCcgcguuugggaagGUcCCGGAcagGCGCCg -3' miRNA: 3'- -CGGgAGCUU-----UGCAG-------------UA-GGCCU---UGCGG- -5' |
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9588 | 3' | -53 | NC_002577.1 | + | 122730 | 0.7 | 0.900175 |
Target: 5'- cGCCUUCGGGccgcgacccucGCGg-GUCCGGAAcCGUCg -3' miRNA: 3'- -CGGGAGCUU-----------UGCagUAGGCCUU-GCGG- -5' |
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9588 | 3' | -53 | NC_002577.1 | + | 33307 | 0.7 | 0.912475 |
Target: 5'- uGCCCUCGcAGCG-CAcgCGGAauccuuACGCCu -3' miRNA: 3'- -CGGGAGCuUUGCaGUagGCCU------UGCGG- -5' |
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9588 | 3' | -53 | NC_002577.1 | + | 11989 | 0.7 | 0.918272 |
Target: 5'- cGCCCgCGu--CGUCGcCCGGGucguCGCCc -3' miRNA: 3'- -CGGGaGCuuuGCAGUaGGCCUu---GCGG- -5' |
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9588 | 3' | -53 | NC_002577.1 | + | 112832 | 0.7 | 0.918272 |
Target: 5'- cGCCUgcuucCGuuuuGCGUgAUaCCGGAGCGCUg -3' miRNA: 3'- -CGGGa----GCuu--UGCAgUA-GGCCUUGCGG- -5' |
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9588 | 3' | -53 | NC_002577.1 | + | 71895 | 0.69 | 0.923832 |
Target: 5'- cGCCCUacaGAucuGCGUCGUaugaaaaugcaaCCGGucAUGCCg -3' miRNA: 3'- -CGGGAg--CUu--UGCAGUA------------GGCCu-UGCGG- -5' |
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9588 | 3' | -53 | NC_002577.1 | + | 90141 | 0.69 | 0.929155 |
Target: 5'- uCCCUCGAAGCGaauagaaAUuuGGAcacCGCCu -3' miRNA: 3'- cGGGAGCUUUGCag-----UAggCCUu--GCGG- -5' |
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9588 | 3' | -53 | NC_002577.1 | + | 39623 | 0.69 | 0.932739 |
Target: 5'- gGCCggCGGAgaauauacacgccaGCGUaguGUCCGGAuuGCGCCa -3' miRNA: 3'- -CGGgaGCUU--------------UGCAg--UAGGCCU--UGCGG- -5' |
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9588 | 3' | -53 | NC_002577.1 | + | 33539 | 0.69 | 0.934239 |
Target: 5'- uGCCC--GAAGCGUagucUUCGGAACGCg -3' miRNA: 3'- -CGGGagCUUUGCAgu--AGGCCUUGCGg -5' |
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9588 | 3' | -53 | NC_002577.1 | + | 20613 | 0.69 | 0.939087 |
Target: 5'- uUUgUCGAAACGguagacgaUCAggaacUCCGGAugGCCg -3' miRNA: 3'- cGGgAGCUUUGC--------AGU-----AGGCCUugCGG- -5' |
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9588 | 3' | -53 | NC_002577.1 | + | 52373 | 0.69 | 0.939087 |
Target: 5'- cCCCUCcguAugGUCGcugcuagacaUCCGGAGacCGCCg -3' miRNA: 3'- cGGGAGcu-UugCAGU----------AGGCCUU--GCGG- -5' |
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9588 | 3' | -53 | NC_002577.1 | + | 12037 | 0.69 | 0.943699 |
Target: 5'- cGCCCggGu--CGUCGcCCGGGucgGCGCCc -3' miRNA: 3'- -CGGGagCuuuGCAGUaGGCCU---UGCGG- -5' |
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9588 | 3' | -53 | NC_002577.1 | + | 121649 | 0.69 | 0.943699 |
Target: 5'- cGCCCggGu--CGUCGcCCGGGuccGCGCCc -3' miRNA: 3'- -CGGGagCuuuGCAGUaGGCCU---UGCGG- -5' |
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9588 | 3' | -53 | NC_002577.1 | + | 100830 | 0.68 | 0.948076 |
Target: 5'- cGCCCaUUGAGuauCGUCGcuucgauaaUCaGGGACGCCc -3' miRNA: 3'- -CGGG-AGCUUu--GCAGU---------AGgCCUUGCGG- -5' |
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9588 | 3' | -53 | NC_002577.1 | + | 104690 | 0.68 | 0.948076 |
Target: 5'- cGCCUgcgUGAcgauccgcGGCGUCGUCCGcGcacGCGCCc -3' miRNA: 3'- -CGGGa--GCU--------UUGCAGUAGGC-Cu--UGCGG- -5' |
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9588 | 3' | -53 | NC_002577.1 | + | 136816 | 0.68 | 0.952223 |
Target: 5'- gGUUCUCGAcGGCGUUGUCC---GCGCCg -3' miRNA: 3'- -CGGGAGCU-UUGCAGUAGGccuUGCGG- -5' |
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9588 | 3' | -53 | NC_002577.1 | + | 75861 | 0.68 | 0.952223 |
Target: 5'- cGCgCUCGAuuCGUCcgugCUGGAGCGaUCg -3' miRNA: 3'- -CGgGAGCUuuGCAGua--GGCCUUGC-GG- -5' |
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9588 | 3' | -53 | NC_002577.1 | + | 137167 | 0.68 | 0.952223 |
Target: 5'- cGCCgaCGcgGCcUCuUCCGGAACGUCc -3' miRNA: 3'- -CGGgaGCuuUGcAGuAGGCCUUGCGG- -5' |
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9588 | 3' | -53 | NC_002577.1 | + | 160521 | 0.68 | 0.952223 |
Target: 5'- gGUUCUCGAcGGCGUUGUCC---GCGCCg -3' miRNA: 3'- -CGGGAGCU-UUGCAGUAGGccuUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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