miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9588 3' -53 NC_002577.1 + 100553 0.66 0.979836
Target:  5'- uGgUCUCGuc-CaUCAUCCGGAGCaGCCc -3'
miRNA:   3'- -CgGGAGCuuuGcAGUAGGCCUUG-CGG- -5'
9588 3' -53 NC_002577.1 + 159988 0.66 0.979836
Target:  5'- cGUCCUCGcaAGACGacagCAuuUCCGcGAccGCGCCc -3'
miRNA:   3'- -CGGGAGC--UUUGCa---GU--AGGC-CU--UGCGG- -5'
9588 3' -53 NC_002577.1 + 110617 0.67 0.977563
Target:  5'- cUCCaUCGugGCuUCuauagcuUCCGGAGCGCCu -3'
miRNA:   3'- cGGG-AGCuuUGcAGu------AGGCCUUGCGG- -5'
9588 3' -53 NC_002577.1 + 82639 0.67 0.977563
Target:  5'- gGCCCUCGAcGCcggCGUUCGauuGAugcACGCCu -3'
miRNA:   3'- -CGGGAGCUuUGca-GUAGGC---CU---UGCGG- -5'
9588 3' -53 NC_002577.1 + 122032 0.67 0.977563
Target:  5'- cGCgUUCGccgcGGCGUCcgAUCCGGGAuCGCUc -3'
miRNA:   3'- -CGgGAGCu---UUGCAG--UAGGCCUU-GCGG- -5'
9588 3' -53 NC_002577.1 + 160434 0.67 0.975106
Target:  5'- cCCCU-GAAGCGUg--CCGcGACGCCg -3'
miRNA:   3'- cGGGAgCUUUGCAguaGGCcUUGCGG- -5'
9588 3' -53 NC_002577.1 + 136904 0.67 0.975106
Target:  5'- cCCCU-GAAGCGUg--CCGcGACGCCg -3'
miRNA:   3'- cGGGAgCUUUGCAguaGGCcUUGCGG- -5'
9588 3' -53 NC_002577.1 + 136230 0.67 0.972459
Target:  5'- -aCCUCGGuuuuGCGggCGUCCuGGAacaccugcaACGCCu -3'
miRNA:   3'- cgGGAGCUu---UGCa-GUAGG-CCU---------UGCGG- -5'
9588 3' -53 NC_002577.1 + 61871 0.67 0.972459
Target:  5'- cGCUCUCGuacauuuuGCGUC-UCCGaGcAACGUCa -3'
miRNA:   3'- -CGGGAGCuu------UGCAGuAGGC-C-UUGCGG- -5'
9588 3' -53 NC_002577.1 + 12080 0.67 0.972459
Target:  5'- uGCgCCUCGuccGCGUCcgcgcCCGGGucguCGCCc -3'
miRNA:   3'- -CG-GGAGCuu-UGCAGua---GGCCUu---GCGG- -5'
9588 3' -53 NC_002577.1 + 161108 0.67 0.972459
Target:  5'- -aCCUCGGuuuuGCGggCGUCCuGGAacaccugcaACGCCu -3'
miRNA:   3'- cgGGAGCUu---UGCa-GUAGG-CCU---------UGCGG- -5'
9588 3' -53 NC_002577.1 + 108167 0.67 0.972459
Target:  5'- uGUCCUCGcacGCGUCGggggcUCCGuGGCGCa -3'
miRNA:   3'- -CGGGAGCuu-UGCAGU-----AGGCcUUGCGg -5'
9588 3' -53 NC_002577.1 + 122350 0.67 0.969614
Target:  5'- gGCCCggucauaaGAAGCGgaggCG-CCGGAucuccgcuuagaGCGCCg -3'
miRNA:   3'- -CGGGag------CUUUGCa---GUaGGCCU------------UGCGG- -5'
9588 3' -53 NC_002577.1 + 11264 0.67 0.969614
Target:  5'- gGCCCggucauaaGAAGCGgaggCG-CCGGAucuccgcuuagaGCGCCg -3'
miRNA:   3'- -CGGGag------CUUUGCa---GUaGGCCU------------UGCGG- -5'
9588 3' -53 NC_002577.1 + 4622 0.67 0.966566
Target:  5'- cGUCC-CGuc-CGaCGUuuGGAACGCCg -3'
miRNA:   3'- -CGGGaGCuuuGCaGUAggCCUUGCGG- -5'
9588 3' -53 NC_002577.1 + 128992 0.67 0.966566
Target:  5'- cGUCC-CGuc-CGaCGUuuGGAACGCCg -3'
miRNA:   3'- -CGGGaGCuuuGCaGUAggCCUUGCGG- -5'
9588 3' -53 NC_002577.1 + 158752 0.68 0.963307
Target:  5'- cGCCCucuucaUCGGAACaGUCGUCUGc--CGCCc -3'
miRNA:   3'- -CGGG------AGCUUUG-CAGUAGGCcuuGCGG- -5'
9588 3' -53 NC_002577.1 + 138585 0.68 0.963307
Target:  5'- cGCCCucuucaUCGGAACaGUCGUCUGc--CGCCc -3'
miRNA:   3'- -CGGG------AGCUUUG-CAGUAGGCcuuGCGG- -5'
9588 3' -53 NC_002577.1 + 105154 0.68 0.959834
Target:  5'- cGCuCUUCGGAuCGuUCAggCCGGGAUGCg -3'
miRNA:   3'- -CG-GGAGCUUuGC-AGUa-GGCCUUGCGg -5'
9588 3' -53 NC_002577.1 + 41001 0.68 0.959834
Target:  5'- gGCCCU---GACGggagaGUCCGcGGAUGCCa -3'
miRNA:   3'- -CGGGAgcuUUGCag---UAGGC-CUUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.