miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9588 3' -53 NC_002577.1 + 38188 0.66 0.985632
Target:  5'- cGCCCggaUCGccGCGUCGUUCaGAACGg- -3'
miRNA:   3'- -CGGG---AGCuuUGCAGUAGGcCUUGCgg -5'
9588 3' -53 NC_002577.1 + 39623 0.69 0.932739
Target:  5'- gGCCggCGGAgaauauacacgccaGCGUaguGUCCGGAuuGCGCCa -3'
miRNA:   3'- -CGGgaGCUU--------------UGCAg--UAGGCCU--UGCGG- -5'
9588 3' -53 NC_002577.1 + 41001 0.68 0.959834
Target:  5'- gGCCCU---GACGggagaGUCCGcGGAUGCCa -3'
miRNA:   3'- -CGGGAgcuUUGCag---UAGGC-CUUGCGG- -5'
9588 3' -53 NC_002577.1 + 41168 0.71 0.872836
Target:  5'- uGgCCUCGu-ACGUgcaGUCCGGAguggcaccgGCGCCa -3'
miRNA:   3'- -CgGGAGCuuUGCAg--UAGGCCU---------UGCGG- -5'
9588 3' -53 NC_002577.1 + 41595 0.66 0.979836
Target:  5'- gGCCC-CGAAGCGUgaaauaUAUCUGccGCGUCg -3'
miRNA:   3'- -CGGGaGCUUUGCA------GUAGGCcuUGCGG- -5'
9588 3' -53 NC_002577.1 + 52373 0.69 0.939087
Target:  5'- cCCCUCcguAugGUCGcugcuagacaUCCGGAGacCGCCg -3'
miRNA:   3'- cGGGAGcu-UugCAGU----------AGGCCUU--GCGG- -5'
9588 3' -53 NC_002577.1 + 61871 0.67 0.972459
Target:  5'- cGCUCUCGuacauuuuGCGUC-UCCGaGcAACGUCa -3'
miRNA:   3'- -CGGGAGCuu------UGCAGuAGGC-C-UUGCGG- -5'
9588 3' -53 NC_002577.1 + 68390 0.66 0.985632
Target:  5'- --aCUCGAAugGUg--CUGGAcaACGCCg -3'
miRNA:   3'- cggGAGCUUugCAguaGGCCU--UGCGG- -5'
9588 3' -53 NC_002577.1 + 71895 0.69 0.923832
Target:  5'- cGCCCUacaGAucuGCGUCGUaugaaaaugcaaCCGGucAUGCCg -3'
miRNA:   3'- -CGGGAg--CUu--UGCAGUA------------GGCCu-UGCGG- -5'
9588 3' -53 NC_002577.1 + 75861 0.68 0.952223
Target:  5'- cGCgCUCGAuuCGUCcgugCUGGAGCGaUCg -3'
miRNA:   3'- -CGgGAGCUuuGCAGua--GGCCUUGC-GG- -5'
9588 3' -53 NC_002577.1 + 82639 0.67 0.977563
Target:  5'- gGCCCUCGAcGCcggCGUUCGauuGAugcACGCCu -3'
miRNA:   3'- -CGGGAGCUuUGca-GUAGGC---CU---UGCGG- -5'
9588 3' -53 NC_002577.1 + 90141 0.69 0.929155
Target:  5'- uCCCUCGAAGCGaauagaaAUuuGGAcacCGCCu -3'
miRNA:   3'- cGGGAGCUUUGCag-----UAggCCUu--GCGG- -5'
9588 3' -53 NC_002577.1 + 100553 0.66 0.979836
Target:  5'- uGgUCUCGuc-CaUCAUCCGGAGCaGCCc -3'
miRNA:   3'- -CgGGAGCuuuGcAGUAGGCCUUG-CGG- -5'
9588 3' -53 NC_002577.1 + 100830 0.68 0.948076
Target:  5'- cGCCCaUUGAGuauCGUCGcuucgauaaUCaGGGACGCCc -3'
miRNA:   3'- -CGGG-AGCUUu--GCAGU---------AGgCCUUGCGG- -5'
9588 3' -53 NC_002577.1 + 101365 0.66 0.987248
Target:  5'- gGUCCcCGAAACG-CccCCcGAACGCCu -3'
miRNA:   3'- -CGGGaGCUUUGCaGuaGGcCUUGCGG- -5'
9588 3' -53 NC_002577.1 + 104690 0.68 0.948076
Target:  5'- cGCCUgcgUGAcgauccgcGGCGUCGUCCGcGcacGCGCCc -3'
miRNA:   3'- -CGGGa--GCU--------UUGCAGUAGGC-Cu--UGCGG- -5'
9588 3' -53 NC_002577.1 + 105154 0.68 0.959834
Target:  5'- cGCuCUUCGGAuCGuUCAggCCGGGAUGCg -3'
miRNA:   3'- -CG-GGAGCUUuGC-AGUa-GGCCUUGCGg -5'
9588 3' -53 NC_002577.1 + 107286 0.75 0.683867
Target:  5'- gGUCCUCGggGCGU--UCCG--ACGCCa -3'
miRNA:   3'- -CGGGAGCuuUGCAguAGGCcuUGCGG- -5'
9588 3' -53 NC_002577.1 + 108167 0.67 0.972459
Target:  5'- uGUCCUCGcacGCGUCGggggcUCCGuGGCGCa -3'
miRNA:   3'- -CGGGAGCuu-UGCAGU-----AGGCcUUGCGg -5'
9588 3' -53 NC_002577.1 + 108605 0.78 0.493258
Target:  5'- cGCCC-CGAGACGUUggAUCCGGGucCGUCa -3'
miRNA:   3'- -CGGGaGCUUUGCAG--UAGGCCUu-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.