miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9588 3' -53 NC_002577.1 + 158396 0.68 0.955759
Target:  5'- aGCCg-UGggGCGUCccgccggguUCCGGAuuuccguuccgcaGCGCCa -3'
miRNA:   3'- -CGGgaGCuuUGCAGu--------AGGCCU-------------UGCGG- -5'
9588 3' -53 NC_002577.1 + 82639 0.67 0.977563
Target:  5'- gGCCCUCGAcGCcggCGUUCGauuGAugcACGCCu -3'
miRNA:   3'- -CGGGAGCUuUGca-GUAGGC---CU---UGCGG- -5'
9588 3' -53 NC_002577.1 + 136904 0.67 0.975106
Target:  5'- cCCCU-GAAGCGUg--CCGcGACGCCg -3'
miRNA:   3'- cGGGAgCUUUGCAguaGGCcUUGCGG- -5'
9588 3' -53 NC_002577.1 + 12080 0.67 0.972459
Target:  5'- uGCgCCUCGuccGCGUCcgcgcCCGGGucguCGCCc -3'
miRNA:   3'- -CG-GGAGCuu-UGCAGua---GGCCUu---GCGG- -5'
9588 3' -53 NC_002577.1 + 136230 0.67 0.972459
Target:  5'- -aCCUCGGuuuuGCGggCGUCCuGGAacaccugcaACGCCu -3'
miRNA:   3'- cgGGAGCUu---UGCa-GUAGG-CCU---------UGCGG- -5'
9588 3' -53 NC_002577.1 + 122350 0.67 0.969614
Target:  5'- gGCCCggucauaaGAAGCGgaggCG-CCGGAucuccgcuuagaGCGCCg -3'
miRNA:   3'- -CGGGag------CUUUGCa---GUaGGCCU------------UGCGG- -5'
9588 3' -53 NC_002577.1 + 128992 0.67 0.966566
Target:  5'- cGUCC-CGuc-CGaCGUuuGGAACGCCg -3'
miRNA:   3'- -CGGGaGCuuuGCaGUAggCCUUGCGG- -5'
9588 3' -53 NC_002577.1 + 138585 0.68 0.963307
Target:  5'- cGCCCucuucaUCGGAACaGUCGUCUGc--CGCCc -3'
miRNA:   3'- -CGGG------AGCUUUG-CAGUAGGCcuuGCGG- -5'
9588 3' -53 NC_002577.1 + 105154 0.68 0.959834
Target:  5'- cGCuCUUCGGAuCGuUCAggCCGGGAUGCg -3'
miRNA:   3'- -CG-GGAGCUUuGC-AGUa-GGCCUUGCGg -5'
9588 3' -53 NC_002577.1 + 159988 0.66 0.979836
Target:  5'- cGUCCUCGcaAGACGacagCAuuUCCGcGAccGCGCCc -3'
miRNA:   3'- -CGGGAGC--UUUGCa---GU--AGGC-CU--UGCGG- -5'
9588 3' -53 NC_002577.1 + 122240 0.66 0.979836
Target:  5'- aGCCCcgUCgGGAGCGaUC--CCGGAucggACGCCg -3'
miRNA:   3'- -CGGG--AG-CUUUGC-AGuaGGCCU----UGCGG- -5'
9588 3' -53 NC_002577.1 + 100553 0.66 0.979836
Target:  5'- uGgUCUCGuc-CaUCAUCCGGAGCaGCCc -3'
miRNA:   3'- -CgGGAGCuuuGcAGUAGGCCUUG-CGG- -5'
9588 3' -53 NC_002577.1 + 11858 0.66 0.988721
Target:  5'- uCCCUCu---CGgCGUCCGGAgggGCGCg -3'
miRNA:   3'- cGGGAGcuuuGCaGUAGGCCU---UGCGg -5'
9588 3' -53 NC_002577.1 + 125917 0.66 0.988721
Target:  5'- cCCCUCGGcccGCGg-AUUCGGAucGCGCUc -3'
miRNA:   3'- cGGGAGCUu--UGCagUAGGCCU--UGCGG- -5'
9588 3' -53 NC_002577.1 + 122020 0.66 0.988721
Target:  5'- gGCCCggCGGAACGcgAUgCGGcgggggaaaaGGCGCCg -3'
miRNA:   3'- -CGGGa-GCUUUGCagUAgGCC----------UUGCGG- -5'
9588 3' -53 NC_002577.1 + 101365 0.66 0.987248
Target:  5'- gGUCCcCGAAACG-CccCCcGAACGCCu -3'
miRNA:   3'- -CGGGaGCUUUGCaGuaGGcCUUGCGG- -5'
9588 3' -53 NC_002577.1 + 38188 0.66 0.985632
Target:  5'- cGCCCggaUCGccGCGUCGUUCaGAACGg- -3'
miRNA:   3'- -CGGG---AGCuuUGCAGUAGGcCUUGCgg -5'
9588 3' -53 NC_002577.1 + 159119 0.66 0.985462
Target:  5'- cCUCUUGGucGAgGUCAUCCGGcgguggcGGCGCa -3'
miRNA:   3'- cGGGAGCU--UUgCAGUAGGCC-------UUGCGg -5'
9588 3' -53 NC_002577.1 + 155444 0.66 0.983863
Target:  5'- cGCCCUCGGGAgagUGcUCGcCCGGGG-GCUa -3'
miRNA:   3'- -CGGGAGCUUU---GC-AGUaGGCCUUgCGG- -5'
9588 3' -53 NC_002577.1 + 159216 0.66 0.981933
Target:  5'- uGCUCUacuucaGGGAUGcC--CCGGAGCGCCu -3'
miRNA:   3'- -CGGGAg-----CUUUGCaGuaGGCCUUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.