miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9589 5' -56.7 NC_002577.1 + 92723 0.66 0.922431
Target:  5'- aGGGcaccuccgagcuUUGAGUAUUAUGaaCCGAUGGACGg -3'
miRNA:   3'- -CCCu-----------AGCUCGUGGUGC--GGCUACCUGC- -5'
9589 5' -56.7 NC_002577.1 + 3263 0.66 0.918048
Target:  5'- --cGUCGAGCACCGUGCUGGaGGAa- -3'
miRNA:   3'- cccUAGCUCGUGGUGCGGCUaCCUgc -5'
9589 5' -56.7 NC_002577.1 + 130351 0.66 0.918048
Target:  5'- --cGUCGAGCACCGUGCUGGaGGAa- -3'
miRNA:   3'- cccUAGCUCGUGGUGCGGCUaCCUgc -5'
9589 5' -56.7 NC_002577.1 + 140775 0.66 0.912365
Target:  5'- cGG--CGAGCGgCgugcagGCGCCGGUGGGCu -3'
miRNA:   3'- cCCuaGCUCGUgG------UGCGGCUACCUGc -5'
9589 5' -56.7 NC_002577.1 + 156562 0.66 0.912365
Target:  5'- cGG--CGAGCGgCgugcagGCGCCGGUGGGCu -3'
miRNA:   3'- cCCuaGCUCGUgG------UGCGGCUACCUGc -5'
9589 5' -56.7 NC_002577.1 + 83343 0.66 0.912365
Target:  5'- gGGGA-CGAGuCGCUACGagaCGGgcuaUGGACa -3'
miRNA:   3'- -CCCUaGCUC-GUGGUGCg--GCU----ACCUGc -5'
9589 5' -56.7 NC_002577.1 + 141154 0.66 0.911785
Target:  5'- cGGGA-CGGGCugCcgaccggGCGUCGggGGcACGg -3'
miRNA:   3'- -CCCUaGCUCGugG-------UGCGGCuaCC-UGC- -5'
9589 5' -56.7 NC_002577.1 + 156184 0.66 0.911785
Target:  5'- cGGGA-CGGGCugCcgaccggGCGUCGggGGcACGg -3'
miRNA:   3'- -CCCUaGCUCGugG-------UGCGGCuaCC-UGC- -5'
9589 5' -56.7 NC_002577.1 + 73761 0.66 0.911201
Target:  5'- cGGaAUCGAGCAUCAagaGCUGGcgacguuuaucgGGACGg -3'
miRNA:   3'- cCC-UAGCUCGUGGUg--CGGCUa-----------CCUGC- -5'
9589 5' -56.7 NC_002577.1 + 15873 0.67 0.89397
Target:  5'- uGGuUCGuGUugCugGCCGA-GGGCa -3'
miRNA:   3'- cCCuAGCuCGugGugCGGCUaCCUGc -5'
9589 5' -56.7 NC_002577.1 + 105658 0.67 0.887397
Target:  5'- -cGAUUaGGCACCguauaaaaugagACGgCGAUGGACGg -3'
miRNA:   3'- ccCUAGcUCGUGG------------UGCgGCUACCUGC- -5'
9589 5' -56.7 NC_002577.1 + 139541 0.67 0.88335
Target:  5'- cGGcgUGcGCGCCGcCGCCGGgcgcggguacucccuUGGACGa -3'
miRNA:   3'- cCCuaGCuCGUGGU-GCGGCU---------------ACCUGC- -5'
9589 5' -56.7 NC_002577.1 + 157796 0.67 0.88335
Target:  5'- cGGcgUGcGCGCCGcCGCCGGgcgcggguacucccuUGGACGa -3'
miRNA:   3'- cCCuaGCuCGUGGU-GCGGCU---------------ACCUGC- -5'
9589 5' -56.7 NC_002577.1 + 128754 0.67 0.88061
Target:  5'- gGGGAcaCG-GCGCgCGCGCCGAUGcuCGg -3'
miRNA:   3'- -CCCUa-GCuCGUG-GUGCGGCUACcuGC- -5'
9589 5' -56.7 NC_002577.1 + 4860 0.67 0.88061
Target:  5'- gGGGAcaCG-GCGCgCGCGCCGAUGcuCGg -3'
miRNA:   3'- -CCCUa-GCuCGUG-GUGCGGCUACcuGC- -5'
9589 5' -56.7 NC_002577.1 + 33630 0.67 0.878532
Target:  5'- uGGcuGUUGAccGCAUCGacauugaaguggacCGCCGAUGGACGg -3'
miRNA:   3'- cCC--UAGCU--CGUGGU--------------GCGGCUACCUGC- -5'
9589 5' -56.7 NC_002577.1 + 122985 0.67 0.873612
Target:  5'- aGGGAUCGGGacgauCCGCGgaCGAgaacgaugGGGCGu -3'
miRNA:   3'- -CCCUAGCUCgu---GGUGCg-GCUa-------CCUGC- -5'
9589 5' -56.7 NC_002577.1 + 10629 0.67 0.873612
Target:  5'- aGGGAUCGGGacgauCCGCGgaCGAgaacgaugGGGCGu -3'
miRNA:   3'- -CCCUAGCUCgu---GGUGCg-GCUa-------CCUGC- -5'
9589 5' -56.7 NC_002577.1 + 134055 0.67 0.873612
Target:  5'- cGGGcggccuagCGAGCGCCcgcGCgGCCGgcGGGCa -3'
miRNA:   3'- -CCCua------GCUCGUGG---UG-CGGCuaCCUGc -5'
9589 5' -56.7 NC_002577.1 + 163273 0.67 0.873612
Target:  5'- cGGGcggccuagCGAGCGCCcgcGCgGCCGgcGGGCa -3'
miRNA:   3'- -CCCua------GCUCGUGG---UG-CGGCuaCCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.