miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9593 3' -50.5 NC_002577.1 + 132472 0.66 0.993416
Target:  5'- --aGGggGGGAugcGGCGcuguagucGCCGGAu- -3'
miRNA:   3'- cuaCCuuCCCUuu-CCGUu-------UGGCCUuu -5'
9593 3' -50.5 NC_002577.1 + 11045 0.66 0.993416
Target:  5'- cGUGGGAGGGggGcGGCGuuucuagcccccGGCgCGGGc- -3'
miRNA:   3'- cUACCUUCCCuuU-CCGU------------UUG-GCCUuu -5'
9593 3' -50.5 NC_002577.1 + 125119 0.66 0.993416
Target:  5'- gGcgGGggGGGggGGGgGGugUGuGAGu -3'
miRNA:   3'- -CuaCCuuCCCuuUCCgUUugGC-CUUu -5'
9593 3' -50.5 NC_002577.1 + 1142 0.66 0.993416
Target:  5'- --aGGggGGGAugcGGCGcuguagucGCCGGAu- -3'
miRNA:   3'- cuaCCuuCCCUuu-CCGUu-------UGGCCUuu -5'
9593 3' -50.5 NC_002577.1 + 8495 0.66 0.993416
Target:  5'- gGcgGGggGGGggGGGgGGugUGuGAGu -3'
miRNA:   3'- -CuaCCuuCCCuuUCCgUUugGC-CUUu -5'
9593 3' -50.5 NC_002577.1 + 122568 0.66 0.993416
Target:  5'- cGUGGGAGGGggGcGGCGuuucuagcccccGGCgCGGGc- -3'
miRNA:   3'- cUACCUUCCCuuU-CCGU------------UUG-GCCUuu -5'
9593 3' -50.5 NC_002577.1 + 19277 0.66 0.992388
Target:  5'- aGAUGGGgcGGGGAAucuauaaaauAGGCAAgguccGCgCGGAu- -3'
miRNA:   3'- -CUACCU--UCCCUU----------UCCGUU-----UG-GCCUuu -5'
9593 3' -50.5 NC_002577.1 + 136702 0.66 0.992388
Target:  5'- -uUGGgcGGGAAAGGC---CCGGc-- -3'
miRNA:   3'- cuACCuuCCCUUUCCGuuuGGCCuuu -5'
9593 3' -50.5 NC_002577.1 + 160636 0.66 0.992388
Target:  5'- -uUGGgcGGGAAAGGC---CCGGc-- -3'
miRNA:   3'- cuACCuuCCCUUUCCGuuuGGCCuuu -5'
9593 3' -50.5 NC_002577.1 + 6081 0.66 0.989954
Target:  5'- --gGGGAGGGggGGGgAAGggaGGAAGa -3'
miRNA:   3'- cuaCCUUCCCuuUCCgUUUgg-CCUUU- -5'
9593 3' -50.5 NC_002577.1 + 127533 0.66 0.989954
Target:  5'- --gGGGAGGGggGGGgAAGggaGGAAGa -3'
miRNA:   3'- cuaCCUUCCCuuUCCgUUUgg-CCUUU- -5'
9593 3' -50.5 NC_002577.1 + 155313 0.66 0.989954
Target:  5'- uGggGGggGGGggGGGUGGugguGgUGGAGAc -3'
miRNA:   3'- -CuaCCuuCCCuuUCCGUU----UgGCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 7582 0.67 0.985024
Target:  5'- gGggGGggGGGggGGGgGAuccgaaccgugcgGCgGGAAGg -3'
miRNA:   3'- -CuaCCuuCCCuuUCCgUU-------------UGgCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 126032 0.67 0.985024
Target:  5'- gGggGGggGGGggGGGgGAuccgaaccgugcgGCgGGAAGg -3'
miRNA:   3'- -CuaCCuuCCCuuUCCgUU-------------UGgCCUUU- -5'
9593 3' -50.5 NC_002577.1 + 162973 0.67 0.984081
Target:  5'- gGggGGggGGGggGGGCGcgacuccaagcguuaGACCGc--- -3'
miRNA:   3'- -CuaCCuuCCCuuUCCGU---------------UUGGCcuuu -5'
9593 3' -50.5 NC_002577.1 + 134354 0.67 0.982686
Target:  5'- gGggGGggGGGggGGGCGcgacucaagcguuaGACCGc--- -3'
miRNA:   3'- -CuaCCuuCCCuuUCCGU--------------UUGGCcuuu -5'
9593 3' -50.5 NC_002577.1 + 137244 0.67 0.9812
Target:  5'- uGUGGGuc-GAGGGGCGAACCGGu-- -3'
miRNA:   3'- cUACCUuccCUUUCCGUUUGGCCuuu -5'
9593 3' -50.5 NC_002577.1 + 160094 0.67 0.9812
Target:  5'- uGUGGGuc-GAGGGGCGAACCGGu-- -3'
miRNA:   3'- cUACCUuccCUUUCCGUUUGGCCuuu -5'
9593 3' -50.5 NC_002577.1 + 9629 0.68 0.978916
Target:  5'- --cGGggGGGAGGGGaaaAGAcguuugcguuauCCGGAAu -3'
miRNA:   3'- cuaCCuuCCCUUUCCg--UUU------------GGCCUUu -5'
9593 3' -50.5 NC_002577.1 + 123984 0.68 0.978916
Target:  5'- --cGGggGGGAGGGGaaaAGAcguuugcguuauCCGGAAu -3'
miRNA:   3'- cuaCCuuCCCUUUCCg--UUU------------GGCCUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.