Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9593 | 3' | -50.5 | NC_002577.1 | + | 137244 | 0.67 | 0.9812 |
Target: 5'- uGUGGGuc-GAGGGGCGAACCGGu-- -3' miRNA: 3'- cUACCUuccCUUUCCGUUUGGCCuuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 136702 | 0.66 | 0.992388 |
Target: 5'- -uUGGgcGGGAAAGGC---CCGGc-- -3' miRNA: 3'- cuACCuuCCCUUUCCGuuuGGCCuuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 135520 | 0.82 | 0.382736 |
Target: 5'- -cUGGAAGGGGAcGGCGGuccGCCGGAGAc -3' miRNA: 3'- cuACCUUCCCUUuCCGUU---UGGCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 134354 | 0.67 | 0.982686 |
Target: 5'- gGggGGggGGGggGGGCGcgacucaagcguuaGACCGc--- -3' miRNA: 3'- -CuaCCuuCCCuuUCCGU--------------UUGGCcuuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 132472 | 0.66 | 0.993416 |
Target: 5'- --aGGggGGGAugcGGCGcuguagucGCCGGAu- -3' miRNA: 3'- cuaCCuuCCCUuu-CCGUu-------UGGCCUuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 132074 | 0.7 | 0.938968 |
Target: 5'- aAUGGggGGGggGGGgGGAgaGGGu- -3' miRNA: 3'- cUACCuuCCCuuUCCgUUUggCCUuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 131978 | 0.74 | 0.779488 |
Target: 5'- gGggGGggGGGGAGGGgGGAUgGGAAc -3' miRNA: 3'- -CuaCCuuCCCUUUCCgUUUGgCCUUu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 130911 | 0.75 | 0.739378 |
Target: 5'- --gGGggGGGggGGGgGGugUGGAAGg -3' miRNA: 3'- cuaCCuuCCCuuUCCgUUugGCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 129737 | 0.79 | 0.516634 |
Target: 5'- uGUGGggGGGggGGGCGGGaaGGAu- -3' miRNA: 3'- cUACCuuCCCuuUCCGUUUggCCUuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 128536 | 0.69 | 0.956885 |
Target: 5'- -uUGGGAGGGcucuGGGCGAagaACCGGc-- -3' miRNA: 3'- cuACCUUCCCuu--UCCGUU---UGGCCuuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 127533 | 0.66 | 0.989954 |
Target: 5'- --gGGGAGGGggGGGgAAGggaGGAAGa -3' miRNA: 3'- cuaCCUUCCCuuUCCgUUUgg-CCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 127491 | 0.71 | 0.910673 |
Target: 5'- gGggGGAAGGGAGGGGgGGAagGGAGGg -3' miRNA: 3'- -CuaCCUUCCCUUUCCgUUUggCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 127465 | 0.71 | 0.910673 |
Target: 5'- gGggGGAAGGGAGGGGgGGAagGGAGGg -3' miRNA: 3'- -CuaCCUUCCCUUUCCgUUUggCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 127439 | 0.71 | 0.910673 |
Target: 5'- gGggGGAAGGGAGGGGgGGAagGGAGGg -3' miRNA: 3'- -CuaCCUUCCCUUUCCgUUUggCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 127406 | 0.69 | 0.964333 |
Target: 5'- --gGGAGGGGggGGGgAGAagaGGGGAa -3' miRNA: 3'- cuaCCUUCCCuuUCCgUUUgg-CCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 127350 | 0.76 | 0.665607 |
Target: 5'- gGggGGAGGGGGAAGGCugaaCGGAGGu -3' miRNA: 3'- -CuaCCUUCCCUUUCCGuuugGCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 127311 | 0.77 | 0.644105 |
Target: 5'- gGggGGAGGGGGAAGGCugaaCGGAGGg -3' miRNA: 3'- -CuaCCUUCCCUUUCCGuuugGCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 126965 | 0.72 | 0.87587 |
Target: 5'- uGggGGggGGGGGAGGCcugaacGGCCGGc-- -3' miRNA: 3'- -CuaCCuuCCCUUUCCGu-----UUGGCCuuu -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 126751 | 1.07 | 0.011297 |
Target: 5'- cGAUGGAAGGGAAAGGCAAACCGGAAAa -3' miRNA: 3'- -CUACCUUCCCUUUCCGUUUGGCCUUU- -5' |
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9593 | 3' | -50.5 | NC_002577.1 | + | 126278 | 0.68 | 0.97083 |
Target: 5'- uAUGGggGGGGGAGGgGGGggGGggGg -3' miRNA: 3'- cUACCuuCCCUUUCCgUUUggCCuuU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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