miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9605 5' -52.3 NC_002577.1 + 118212 0.66 0.985857
Target:  5'- aUACCCGCGCGcGAaaaacgcauugugGCG-AUACUg-GCg -3'
miRNA:   3'- aAUGGGCGUGC-CU-------------CGCuUAUGAagCG- -5'
9605 5' -52.3 NC_002577.1 + 38388 0.66 0.984246
Target:  5'- gUUGCCCGCGgGGuucauguuagcAGCGcAUGCcggCGCc -3'
miRNA:   3'- -AAUGGGCGUgCC-----------UCGCuUAUGaa-GCG- -5'
9605 5' -52.3 NC_002577.1 + 79775 0.66 0.982296
Target:  5'- --gUCCGaugacuauauaCGCGGAGCGGAUcgauGCUcUCGCg -3'
miRNA:   3'- aauGGGC-----------GUGCCUCGCUUA----UGA-AGCG- -5'
9605 5' -52.3 NC_002577.1 + 163202 0.66 0.982296
Target:  5'- cUGgCCGCGCGGAGCcgccgGCggUCGg -3'
miRNA:   3'- aAUgGGCGUGCCUCGcuua-UGa-AGCg -5'
9605 5' -52.3 NC_002577.1 + 134126 0.66 0.982296
Target:  5'- cUGgCCGCGCGGAGCcgccgGCggUCGg -3'
miRNA:   3'- aAUgGGCGUGCCUCGcuua-UGa-AGCg -5'
9605 5' -52.3 NC_002577.1 + 49631 0.66 0.98017
Target:  5'- aUGCCCGUcUGaGAGagggaGggUGCUUgGCa -3'
miRNA:   3'- aAUGGGCGuGC-CUCg----CuuAUGAAgCG- -5'
9605 5' -52.3 NC_002577.1 + 160906 0.66 0.977859
Target:  5'- gUGCUCGcCACGcGAGCGAu--CUcCGCc -3'
miRNA:   3'- aAUGGGC-GUGC-CUCGCUuauGAaGCG- -5'
9605 5' -52.3 NC_002577.1 + 136432 0.66 0.977859
Target:  5'- gUGCUCGcCACGcGAGCGAu--CUcCGCc -3'
miRNA:   3'- aAUGGGC-GUGC-CUCGCUuauGAaGCG- -5'
9605 5' -52.3 NC_002577.1 + 78105 0.67 0.975356
Target:  5'- -aGCCCGCGgGGAcGC---UGCUUCGa -3'
miRNA:   3'- aaUGGGCGUgCCU-CGcuuAUGAAGCg -5'
9605 5' -52.3 NC_002577.1 + 17848 0.67 0.972652
Target:  5'- -gACgUCGgGCGGAGCGcAGUACUUaguccaCGCg -3'
miRNA:   3'- aaUG-GGCgUGCCUCGC-UUAUGAA------GCG- -5'
9605 5' -52.3 NC_002577.1 + 141301 0.67 0.96974
Target:  5'- cUGCCCGCGCGGcucccgucGCGGGcagccuUGCcggCGCa -3'
miRNA:   3'- aAUGGGCGUGCCu-------CGCUU------AUGaa-GCG- -5'
9605 5' -52.3 NC_002577.1 + 156037 0.67 0.96974
Target:  5'- cUGCCCGCGCGGcucccgucGCGGGcagccuUGCcggCGCa -3'
miRNA:   3'- aAUGGGCGUGCCu-------CGCUU------AUGaa-GCG- -5'
9605 5' -52.3 NC_002577.1 + 153761 0.67 0.966613
Target:  5'- uUUGCCUaaACGGGGCa---GCUUCGCg -3'
miRNA:   3'- -AAUGGGcgUGCCUCGcuuaUGAAGCG- -5'
9605 5' -52.3 NC_002577.1 + 129537 0.67 0.966613
Target:  5'- cUGCCCGCGgGGAaaugGCGGuguguguaAUGCUUCu- -3'
miRNA:   3'- aAUGGGCGUgCCU----CGCU--------UAUGAAGcg -5'
9605 5' -52.3 NC_002577.1 + 4077 0.67 0.966613
Target:  5'- cUGCCCGCGgGGAaaugGCGGuguguguaAUGCUUCu- -3'
miRNA:   3'- aAUGGGCGUgCCU----CGCU--------UAUGAAGcg -5'
9605 5' -52.3 NC_002577.1 + 28941 0.67 0.963264
Target:  5'- -gGCCCG-AUGGAGggcUGggUACcgUCGCa -3'
miRNA:   3'- aaUGGGCgUGCCUC---GCuuAUGa-AGCG- -5'
9605 5' -52.3 NC_002577.1 + 158813 0.67 0.963264
Target:  5'- -gACCCGCGaggcaGGAGCGccucAAUGCgcUGCc -3'
miRNA:   3'- aaUGGGCGUg----CCUCGC----UUAUGaaGCG- -5'
9605 5' -52.3 NC_002577.1 + 138524 0.67 0.963264
Target:  5'- -gACCCGCGaggcaGGAGCGccucAAUGCgcUGCc -3'
miRNA:   3'- aaUGGGCGUg----CCUCGC----UUAUGaaGCG- -5'
9605 5' -52.3 NC_002577.1 + 121809 0.67 0.963264
Target:  5'- -gACCCggGCGCGGAcGCGGAcgagGCgcacgCGCg -3'
miRNA:   3'- aaUGGG--CGUGCCU-CGCUUa---UGaa---GCG- -5'
9605 5' -52.3 NC_002577.1 + 11889 0.67 0.963264
Target:  5'- -gACCCggGCGCGGAcGCGGAcgagGCgcacgCGCg -3'
miRNA:   3'- aaUGGG--CGUGCCU-CGCUUa---UGaa---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.