Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9608 | 5' | -56.3 | NC_002577.1 | + | 118671 | 0.66 | 0.922806 |
Target: 5'- cCCCGAACucggaACGGUUCCAuacaGGUGCGu -3' miRNA: 3'- aGGGUUUG-----UGCCGGGGUuag-CCGUGC- -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 141299 | 0.66 | 0.899172 |
Target: 5'- gCCC--GCGCGGCUCCcGUCGcGgGCa -3' miRNA: 3'- aGGGuuUGUGCCGGGGuUAGC-CgUGc -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 71184 | 0.66 | 0.898534 |
Target: 5'- aCUUAGAC-CGGCCCCGcugcGUaucuccgcaaagaCGGCGCGc -3' miRNA: 3'- aGGGUUUGuGCCGGGGU----UA-------------GCCGUGC- -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 154668 | 0.66 | 0.89269 |
Target: 5'- gUUCGGAgAUGGUCCCGAUUGGCu-- -3' miRNA: 3'- aGGGUUUgUGCCGGGGUUAGCCGugc -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 160539 | 0.66 | 0.89269 |
Target: 5'- uUCCCAAACGCGGacgcggguUCUCGA-CGGCGu- -3' miRNA: 3'- -AGGGUUUGUGCC--------GGGGUUaGCCGUgc -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 136798 | 0.66 | 0.89269 |
Target: 5'- uUCCCAAACGCGGacgcggguUCUCGA-CGGCGu- -3' miRNA: 3'- -AGGGUUUGUGCC--------GGGGUUaGCCGUgc -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 153584 | 0.66 | 0.89269 |
Target: 5'- cCCCGuuuaggcaAACGgGGCCCgGc-CGGCGCGa -3' miRNA: 3'- aGGGU--------UUGUgCCGGGgUuaGCCGUGC- -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 156039 | 0.66 | 0.899172 |
Target: 5'- gCCC--GCGCGGCUCCcGUCGcGgGCa -3' miRNA: 3'- aGGGuuUGUGCCGGGGuUAGC-CgUGc -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 128112 | 0.66 | 0.899172 |
Target: 5'- aCCUuAGCG-GGCCCCGGauagguuucUCGGUugGg -3' miRNA: 3'- aGGGuUUGUgCCGGGGUU---------AGCCGugC- -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 5502 | 0.66 | 0.899172 |
Target: 5'- aCCUuAGCG-GGCCCCGGauagguuucUCGGUugGg -3' miRNA: 3'- aGGGuUUGUgCCGGGGUU---------AGCCGugC- -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 133040 | 0.66 | 0.905427 |
Target: 5'- aCCCGGGCAacuuguaccCGGCCCCGAgCGucucugugcaacGCACu -3' miRNA: 3'- aGGGUUUGU---------GCCGGGGUUaGC------------CGUGc -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 83804 | 0.66 | 0.905427 |
Target: 5'- uUCCCGGACAuCGGCgaugaUCuGUCGGUGCu -3' miRNA: 3'- -AGGGUUUGU-GCCGg----GGuUAGCCGUGc -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 140419 | 0.66 | 0.922806 |
Target: 5'- uUUCCGAGgGCgggGGCCCCcGUaccaggGGCGCGg -3' miRNA: 3'- -AGGGUUUgUG---CCGGGGuUAg-----CCGUGC- -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 154901 | 0.66 | 0.919498 |
Target: 5'- aCCCGAcagcaccuaccaggaGCGCGGUgCCGG-CGGCAg- -3' miRNA: 3'- aGGGUU---------------UGUGCCGgGGUUaGCCGUgc -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 112141 | 0.66 | 0.917246 |
Target: 5'- gUCCC-AACAauCGGCCaCCAucaCGGCAa- -3' miRNA: 3'- -AGGGuUUGU--GCCGG-GGUua-GCCGUgc -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 159455 | 0.66 | 0.917246 |
Target: 5'- gUCCCcGugACGGCCgCGccCGGCGa- -3' miRNA: 3'- -AGGGuUugUGCCGGgGUuaGCCGUgc -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 16785 | 0.66 | 0.911452 |
Target: 5'- gUCCAGGCAUuGaCCUUAAUCGGgACGg -3' miRNA: 3'- aGGGUUUGUGcC-GGGGUUAGCCgUGC- -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 136674 | 0.66 | 0.911452 |
Target: 5'- gCCCAAAUACcgacucuguGGCgUCAgccGUUGGCGCGu -3' miRNA: 3'- aGGGUUUGUG---------CCGgGGU---UAGCCGUGC- -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 130309 | 0.66 | 0.911452 |
Target: 5'- aUCUCAggcAGCACGGCaCCGAUCcggagaGCGCGu -3' miRNA: 3'- -AGGGU---UUGUGCCGgGGUUAGc-----CGUGC- -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 124783 | 0.66 | 0.909669 |
Target: 5'- cCCCAAcuaacccuucgcgcGCACcgcgGGCCUCGGcgCGGUACGu -3' miRNA: 3'- aGGGUU--------------UGUG----CCGGGGUUa-GCCGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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