miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9608 5' -56.3 NC_002577.1 + 403 0.67 0.871919
Target:  5'- gCCCAAGCccuuaaugUGGCCCUAAcaGGCACu -3'
miRNA:   3'- aGGGUUUGu-------GCCGGGGUUagCCGUGc -5'
9608 5' -56.3 NC_002577.1 + 574 0.66 0.905427
Target:  5'- aCCCGGGCAacuuguaccCGGCCCCGAgCGucucugugcaacGCACu -3'
miRNA:   3'- aGGGUUUGU---------GCCGGGGUUaGC------------CGUGc -5'
9608 5' -56.3 NC_002577.1 + 1370 0.74 0.504563
Target:  5'- aCCCucGC-CGGCCCCGAcccucaauccgCGGCACGc -3'
miRNA:   3'- aGGGuuUGuGCCGGGGUUa----------GCCGUGC- -5'
9608 5' -56.3 NC_002577.1 + 3305 0.66 0.911452
Target:  5'- aUCUCAggcAGCACGGCaCCGAUCcggagaGCGCGu -3'
miRNA:   3'- -AGGGU---UUGUGCCGgGGUUAGc-----CGUGC- -5'
9608 5' -56.3 NC_002577.1 + 4408 0.68 0.807729
Target:  5'- gCCguaggaGAGCACGcGCCCCcccauacUCGGCGCGc -3'
miRNA:   3'- aGGg-----UUUGUGC-CGGGGuu-----AGCCGUGC- -5'
9608 5' -56.3 NC_002577.1 + 4458 0.67 0.864568
Target:  5'- aUCCCugcAGCGCGGCCCgGccUCGuuGCGa -3'
miRNA:   3'- -AGGGu--UUGUGCCGGGgUu-AGCcgUGC- -5'
9608 5' -56.3 NC_002577.1 + 5502 0.66 0.899172
Target:  5'- aCCUuAGCG-GGCCCCGGauagguuucUCGGUugGg -3'
miRNA:   3'- aGGGuUUGUgCCGGGGUU---------AGCCGugC- -5'
9608 5' -56.3 NC_002577.1 + 7809 0.76 0.404774
Target:  5'- uUCCCGGAUuCGGCCCCGgcgcuucugcGUCuGCGCGg -3'
miRNA:   3'- -AGGGUUUGuGCCGGGGU----------UAGcCGUGC- -5'
9608 5' -56.3 NC_002577.1 + 8831 0.66 0.909669
Target:  5'- cCCCAAcuaacccuucgcgcGCACcgcgGGCCUCGGcgCGGUACGu -3'
miRNA:   3'- aGGGUU--------------UGUG----CCGGGGUUa-GCCGUGC- -5'
9608 5' -56.3 NC_002577.1 + 9186 0.72 0.60343
Target:  5'- gUCCCGGGCGCGGCUCCGcUaaGCAUu -3'
miRNA:   3'- -AGGGUUUGUGCCGGGGUuAgcCGUGc -5'
9608 5' -56.3 NC_002577.1 + 10336 0.71 0.694242
Target:  5'- cUCCCGAacagaACGCGGCCUC-AUCGGguUc -3'
miRNA:   3'- -AGGGUU-----UGUGCCGGGGuUAGCCguGc -5'
9608 5' -56.3 NC_002577.1 + 10579 0.68 0.852383
Target:  5'- aUCUCGGACGCGcgucgguccguuucuGCCCUug-CGGCGCu -3'
miRNA:   3'- -AGGGUUUGUGC---------------CGGGGuuaGCCGUGc -5'
9608 5' -56.3 NC_002577.1 + 11070 0.67 0.87906
Target:  5'- cCCCcGGCGCGGgCCgCGGcCGGaCACGa -3'
miRNA:   3'- aGGGuUUGUGCCgGG-GUUaGCC-GUGC- -5'
9608 5' -56.3 NC_002577.1 + 11480 0.7 0.73364
Target:  5'- cCCCG---GCGGCCUCGGaCGGCGCc -3'
miRNA:   3'- aGGGUuugUGCCGGGGUUaGCCGUGc -5'
9608 5' -56.3 NC_002577.1 + 12036 0.67 0.885985
Target:  5'- gCCCGGGuCGucGCCCgGGUCGGCGCc -3'
miRNA:   3'- aGGGUUU-GUgcCGGGgUUAGCCGUGc -5'
9608 5' -56.3 NC_002577.1 + 16785 0.66 0.911452
Target:  5'- gUCCAGGCAUuGaCCUUAAUCGGgACGg -3'
miRNA:   3'- aGGGUUUGUGcC-GGGGUUAGCCgUGC- -5'
9608 5' -56.3 NC_002577.1 + 17556 0.67 0.885985
Target:  5'- cCCCGAAUuaugcuguccuaACGGCUCCAaguuGUUGGCGg- -3'
miRNA:   3'- aGGGUUUG------------UGCCGGGGU----UAGCCGUgc -5'
9608 5' -56.3 NC_002577.1 + 29995 0.68 0.841309
Target:  5'- aCCUAAACACGGggcugacgguaCCCAcucUCGGCAUa -3'
miRNA:   3'- aGGGUUUGUGCCg----------GGGUu--AGCCGUGc -5'
9608 5' -56.3 NC_002577.1 + 40391 1.09 0.003268
Target:  5'- cUCCCAAACACGGCCCCAAUCGGCACGu -3'
miRNA:   3'- -AGGGUUUGUGCCGGGGUUAGCCGUGC- -5'
9608 5' -56.3 NC_002577.1 + 51325 0.77 0.348107
Target:  5'- cCCCGAGCACGGaCCC---CGGCACGu -3'
miRNA:   3'- aGGGUUUGUGCCgGGGuuaGCCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.