Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9608 | 5' | -56.3 | NC_002577.1 | + | 40391 | 1.09 | 0.003268 |
Target: 5'- cUCCCAAACACGGCCCCAAUCGGCACGu -3' miRNA: 3'- -AGGGUUUGUGCCGGGGUUAGCCGUGC- -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 51325 | 0.77 | 0.348107 |
Target: 5'- cCCCGAGCACGGaCCC---CGGCACGu -3' miRNA: 3'- aGGGUUUGUGCCgGGGuuaGCCGUGC- -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 125805 | 0.76 | 0.404774 |
Target: 5'- uUCCCGGAUuCGGCCCCGgcgcuucugcGUCuGCGCGg -3' miRNA: 3'- -AGGGUUUGuGCCGGGGU----------UAGcCGUGC- -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 7809 | 0.76 | 0.404774 |
Target: 5'- uUCCCGGAUuCGGCCCCGgcgcuucugcGUCuGCGCGg -3' miRNA: 3'- -AGGGUUUGuGCCGGGGU----------UAGcCGUGC- -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 158063 | 0.75 | 0.448646 |
Target: 5'- cCCCAGACGacuacaucguCGGCCCCGAcgugCGGCcCGg -3' miRNA: 3'- aGGGUUUGU----------GCCGGGGUUa---GCCGuGC- -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 139275 | 0.75 | 0.448646 |
Target: 5'- cCCCAGACGacuacaucguCGGCCCCGAcgugCGGCcCGg -3' miRNA: 3'- aGGGUUUGU----------GCCGGGGUUa---GCCGuGC- -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 132244 | 0.74 | 0.504563 |
Target: 5'- aCCCucGC-CGGCCCCGAcccucaauccgCGGCACGc -3' miRNA: 3'- aGGGuuUGuGCCGGGGUUa----------GCCGUGC- -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 1370 | 0.74 | 0.504563 |
Target: 5'- aCCCucGC-CGGCCCCGAcccucaauccgCGGCACGc -3' miRNA: 3'- aGGGuuUGuGCCGGGGUUa----------GCCGUGC- -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 156069 | 0.72 | 0.593344 |
Target: 5'- gCCgGcGCACGaGCCCCuuUCGGCAUu -3' miRNA: 3'- aGGgUuUGUGC-CGGGGuuAGCCGUGc -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 141269 | 0.72 | 0.593344 |
Target: 5'- gCCgGcGCACGaGCCCCuuUCGGCAUu -3' miRNA: 3'- aGGgUuUGUGC-CGGGGuuAGCCGUGc -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 74317 | 0.72 | 0.594351 |
Target: 5'- cUCUCAAA-ACGGCCCCAuggucacagacacgcUCGGCACu -3' miRNA: 3'- -AGGGUUUgUGCCGGGGUu--------------AGCCGUGc -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 9186 | 0.72 | 0.60343 |
Target: 5'- gUCCCGGGCGCGGCUCCGcUaaGCAUu -3' miRNA: 3'- -AGGGUUUGUGCCGGGGUuAgcCGUGc -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 124427 | 0.72 | 0.60343 |
Target: 5'- gUCCCGGGCGCGGCUCCGcUaaGCAUu -3' miRNA: 3'- -AGGGUUUGUGCCGGGGUuAgcCGUGc -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 123278 | 0.71 | 0.694242 |
Target: 5'- cUCCCGAacagaACGCGGCCUC-AUCGGguUc -3' miRNA: 3'- -AGGGUU-----UGUGCCGGGGuUAGCCguGc -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 10336 | 0.71 | 0.694242 |
Target: 5'- cUCCCGAacagaACGCGGCCUC-AUCGGguUc -3' miRNA: 3'- -AGGGUU-----UGUGCCGGGGuUAGCCguGc -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 122134 | 0.7 | 0.73364 |
Target: 5'- cCCCG---GCGGCCUCGGaCGGCGCc -3' miRNA: 3'- aGGGUuugUGCCGGGGUUaGCCGUGc -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 11480 | 0.7 | 0.73364 |
Target: 5'- cCCCG---GCGGCCUCGGaCGGCGCc -3' miRNA: 3'- aGGGUuugUGCCGGGGUUaGCCGUGc -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 92473 | 0.69 | 0.771659 |
Target: 5'- aUCCaCAAAa--GGCgCCCuAUCGGCACa -3' miRNA: 3'- -AGG-GUUUgugCCG-GGGuUAGCCGUGc -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 129206 | 0.68 | 0.807729 |
Target: 5'- gCCguaggaGAGCACGcGCCCCcccauacUCGGCGCGc -3' miRNA: 3'- aGGg-----UUUGUGC-CGGGGuu-----AGCCGUGC- -5' |
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9608 | 5' | -56.3 | NC_002577.1 | + | 4408 | 0.68 | 0.807729 |
Target: 5'- gCCguaggaGAGCACGcGCCCCcccauacUCGGCGCGc -3' miRNA: 3'- aGGg-----UUUGUGC-CGGGGuu-----AGCCGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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