miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9608 5' -56.3 NC_002577.1 + 7809 0.76 0.404774
Target:  5'- uUCCCGGAUuCGGCCCCGgcgcuucugcGUCuGCGCGg -3'
miRNA:   3'- -AGGGUUUGuGCCGGGGU----------UAGcCGUGC- -5'
9608 5' -56.3 NC_002577.1 + 119746 0.67 0.87906
Target:  5'- aCCCGcauAUACGGCCCUAuuccuauUCGcGUACa -3'
miRNA:   3'- aGGGUu--UGUGCCGGGGUu------AGC-CGUGc -5'
9608 5' -56.3 NC_002577.1 + 158851 0.67 0.885985
Target:  5'- gCCgCGGcCGCGGCCgCGGaggaCGGCGCGg -3'
miRNA:   3'- aGG-GUUuGUGCCGGgGUUa---GCCGUGC- -5'
9608 5' -56.3 NC_002577.1 + 156918 0.66 0.922806
Target:  5'- uUUCCGAGgGCgggGGCCCCcGUaccaggGGCGCGg -3'
miRNA:   3'- -AGGGUUUgUG---CCGGGGuUAg-----CCGUGC- -5'
9608 5' -56.3 NC_002577.1 + 9186 0.72 0.60343
Target:  5'- gUCCCGGGCGCGGCUCCGcUaaGCAUu -3'
miRNA:   3'- -AGGGUUUGUGCCGGGGUuAgcCGUGc -5'
9608 5' -56.3 NC_002577.1 + 10336 0.71 0.694242
Target:  5'- cUCCCGAacagaACGCGGCCUC-AUCGGguUc -3'
miRNA:   3'- -AGGGUU-----UGUGCCGGGGuUAGCCguGc -5'
9608 5' -56.3 NC_002577.1 + 4408 0.68 0.807729
Target:  5'- gCCguaggaGAGCACGcGCCCCcccauacUCGGCGCGc -3'
miRNA:   3'- aGGg-----UUUGUGC-CGGGGuu-----AGCCGUGC- -5'
9608 5' -56.3 NC_002577.1 + 60210 0.68 0.81552
Target:  5'- gCCCAuggguucGGCgGCGGCCUCGggCGGgGCGa -3'
miRNA:   3'- aGGGU-------UUG-UGCCGGGGUuaGCCgUGC- -5'
9608 5' -56.3 NC_002577.1 + 160879 0.67 0.864568
Target:  5'- aUCCUguACACGGCcaaCCCAggCGaGCACc -3'
miRNA:   3'- -AGGGuuUGUGCCG---GGGUuaGC-CGUGc -5'
9608 5' -56.3 NC_002577.1 + 11070 0.67 0.87906
Target:  5'- cCCCcGGCGCGGgCCgCGGcCGGaCACGa -3'
miRNA:   3'- aGGGuUUGUGCCgGG-GUUaGCC-GUGC- -5'
9608 5' -56.3 NC_002577.1 + 403 0.67 0.871919
Target:  5'- gCCCAAGCccuuaaugUGGCCCUAAcaGGCACu -3'
miRNA:   3'- aGGGUUUGu-------GCCGGGGUUagCCGUGc -5'
9608 5' -56.3 NC_002577.1 + 123035 0.67 0.860059
Target:  5'- gUCUCGGACGCGcgucgguccguuucuGCCCUug-CGGCGCu -3'
miRNA:   3'- -AGGGUUUGUGC---------------CGGGGuuaGCCGUGc -5'
9608 5' -56.3 NC_002577.1 + 158063 0.75 0.448646
Target:  5'- cCCCAGACGacuacaucguCGGCCCCGAcgugCGGCcCGg -3'
miRNA:   3'- aGGGUUUGU----------GCCGGGGUUa---GCCGuGC- -5'
9608 5' -56.3 NC_002577.1 + 58783 0.67 0.871919
Target:  5'- cUCCAGAUACGGUagCCAccaCGGCACc -3'
miRNA:   3'- aGGGUUUGUGCCGg-GGUua-GCCGUGc -5'
9608 5' -56.3 NC_002577.1 + 1370 0.74 0.504563
Target:  5'- aCCCucGC-CGGCCCCGAcccucaauccgCGGCACGc -3'
miRNA:   3'- aGGGuuUGuGCCGGGGUUa----------GCCGUGC- -5'
9608 5' -56.3 NC_002577.1 + 155975 0.68 0.840504
Target:  5'- -aCCGAGCGUGGCcgugcccccgacgCCCGGUCGGCAg- -3'
miRNA:   3'- agGGUUUGUGCCG-------------GGGUUAGCCGUgc -5'
9608 5' -56.3 NC_002577.1 + 88059 0.67 0.87906
Target:  5'- uUCCC---CACGGUUCCAGU-GGCGCc -3'
miRNA:   3'- -AGGGuuuGUGCCGGGGUUAgCCGUGc -5'
9608 5' -56.3 NC_002577.1 + 137501 0.67 0.885985
Target:  5'- gUCCGGACGCgcgGGCgcgaCCAAUCGGUAUu -3'
miRNA:   3'- aGGGUUUGUG---CCGg---GGUUAGCCGUGc -5'
9608 5' -56.3 NC_002577.1 + 156069 0.72 0.593344
Target:  5'- gCCgGcGCACGaGCCCCuuUCGGCAUu -3'
miRNA:   3'- aGGgUuUGUGC-CGGGGuuAGCCGUGc -5'
9608 5' -56.3 NC_002577.1 + 11480 0.7 0.73364
Target:  5'- cCCCG---GCGGCCUCGGaCGGCGCc -3'
miRNA:   3'- aGGGUuugUGCCGGGGUUaGCCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.