Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9610 | 5' | -55.5 | NC_002577.1 | + | 16934 | 0.66 | 0.935954 |
Target: 5'- uCGUGAgacgcuCGCUGCGCGGCAgggcccaaaugUACUa- -3' miRNA: 3'- cGCGCUau----GUGACGCGCCGU-----------GUGAga -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 119576 | 0.66 | 0.935954 |
Target: 5'- uCGCGuagACAuCUGCGCGccCACACUUg -3' miRNA: 3'- cGCGCua-UGU-GACGCGCc-GUGUGAGa -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 92176 | 0.66 | 0.925682 |
Target: 5'- uGCGCGAacUGgUGCGUGGagacCGCUCUg -3' miRNA: 3'- -CGCGCUauGUgACGCGCCgu--GUGAGA- -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 101929 | 0.66 | 0.920187 |
Target: 5'- aUGCGGUAUgGCUGCaggGCGGCAUggcuaACUCa -3' miRNA: 3'- cGCGCUAUG-UGACG---CGCCGUG-----UGAGa -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 95344 | 0.66 | 0.914453 |
Target: 5'- aGCGCGAcauaACACuaaaUGgGCGGCgcgACAUUCg -3' miRNA: 3'- -CGCGCUa---UGUG----ACgCGCCG---UGUGAGa -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 79419 | 0.66 | 0.913867 |
Target: 5'- aGCGCGAgcaGCACUaucucggGCgGCGGCAaacccCUCUg -3' miRNA: 3'- -CGCGCUa--UGUGA-------CG-CGCCGUgu---GAGA- -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 44813 | 0.67 | 0.908482 |
Target: 5'- aGCGaCGAaaauUACGCUGUGCGGCcgugGCUg- -3' miRNA: 3'- -CGC-GCU----AUGUGACGCGCCGug--UGAga -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 87340 | 0.67 | 0.908482 |
Target: 5'- cGCGCGAgccCAaUGCGCuGGCAUcUUCUg -3' miRNA: 3'- -CGCGCUau-GUgACGCG-CCGUGuGAGA- -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 72416 | 0.67 | 0.907872 |
Target: 5'- uUGCGAcccgaugUGCugUGCGCGGauaGCGCa-- -3' miRNA: 3'- cGCGCU-------AUGugACGCGCCg--UGUGaga -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 160716 | 0.67 | 0.902276 |
Target: 5'- gGCGgaGAU-CGCUcGCGUGGCgaGCACUCc -3' miRNA: 3'- -CGCg-CUAuGUGA-CGCGCCG--UGUGAGa -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 136621 | 0.67 | 0.902276 |
Target: 5'- gGCGgaGAU-CGCUcGCGUGGCgaGCACUCc -3' miRNA: 3'- -CGCg-CUAuGUGA-CGCGCCG--UGUGAGa -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 8846 | 0.67 | 0.895836 |
Target: 5'- cGCGCGcacCGCgggccucgGCGCGGUACGUUCUc -3' miRNA: 3'- -CGCGCuauGUGa-------CGCGCCGUGUGAGA- -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 124768 | 0.67 | 0.895836 |
Target: 5'- cGCGCGcacCGCgggccucgGCGCGGUACGUUCUc -3' miRNA: 3'- -CGCGCuauGUGa-------CGCGCCGUGUGAGA- -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 1319 | 0.67 | 0.875151 |
Target: 5'- cGCGCGA-GCGCaUGCGC-GCACAUcCg -3' miRNA: 3'- -CGCGCUaUGUG-ACGCGcCGUGUGaGa -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 132295 | 0.67 | 0.875151 |
Target: 5'- cGCGCGA-GCGCaUGCGC-GCACAUcCg -3' miRNA: 3'- -CGCGCUaUGUG-ACGCGcCGUGUGaGa -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 163332 | 0.68 | 0.860267 |
Target: 5'- cGCGCGcAUGCucgcaaaugucgACUGCGCGcauGCGCGCa-- -3' miRNA: 3'- -CGCGC-UAUG------------UGACGCGC---CGUGUGaga -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 133995 | 0.68 | 0.860267 |
Target: 5'- cGCGCGcAUGCucgcaaaugucgACUGCGCGcauGCGCGCa-- -3' miRNA: 3'- -CGCGC-UAUG------------UGACGCGC---CGUGUGaga -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 7952 | 0.68 | 0.852514 |
Target: 5'- aGCGCGGaGCGCggGCGCgGGCAgggaguuaACUCg -3' miRNA: 3'- -CGCGCUaUGUGa-CGCG-CCGUg-------UGAGa -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 101014 | 0.68 | 0.852514 |
Target: 5'- aGCGaCGAUACucaauggGCGCGGC-CGCUg- -3' miRNA: 3'- -CGC-GCUAUGuga----CGCGCCGuGUGAga -5' |
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9610 | 5' | -55.5 | NC_002577.1 | + | 68131 | 0.68 | 0.843754 |
Target: 5'- cCGCGGacuCGCUgagcagauggcgaGCGUGGUACGCUCg -3' miRNA: 3'- cGCGCUau-GUGA-------------CGCGCCGUGUGAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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