miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9611 3' -56.2 NC_002577.1 + 58005 0.66 0.930663
Target:  5'- aGCGUUCAcgagGCCCGccaGGGcGGGCCUCg -3'
miRNA:   3'- cUGUAGGU----UGGGCug-CUC-CUCGGAGg -5'
9611 3' -56.2 NC_002577.1 + 122145 0.66 0.914363
Target:  5'- cACAaccUCCucCCCGGCGGccucGGAcggcGCCUCCc -3'
miRNA:   3'- cUGU---AGGuuGGGCUGCU----CCU----CGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 27566 0.66 0.914363
Target:  5'- -cCGUCCGuuuuuaguaGCCCcgGACGGGGAGCacaUCg -3'
miRNA:   3'- cuGUAGGU---------UGGG--CUGCUCCUCGg--AGg -5'
9611 3' -56.2 NC_002577.1 + 11469 0.66 0.914363
Target:  5'- cACAaccUCCucCCCGGCGGccucGGAcggcGCCUCCc -3'
miRNA:   3'- cUGU---AGGuuGGGCUGCU----CCU----CGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 157863 0.66 0.901085
Target:  5'- --gGUCCAGCCagcgguaugaaaGGCGGGGAaCCUUCg -3'
miRNA:   3'- cugUAGGUUGGg-----------CUGCUCCUcGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 139475 0.66 0.901085
Target:  5'- --gGUCCAGCCagcgguaugaaaGGCGGGGAaCCUUCg -3'
miRNA:   3'- cugUAGGUUGGg-----------CUGCUCCUcGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 147620 0.67 0.895984
Target:  5'- cGGCAUCUcuaGAUCUccCGGGGAGUCUCUc -3'
miRNA:   3'- -CUGUAGG---UUGGGcuGCUCCUCGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 158807 0.67 0.895984
Target:  5'- -gUcgCCGACCCG-CGAGGcaggagcGCCUCa -3'
miRNA:   3'- cuGuaGGUUGGGCuGCUCCu------CGGAGg -5'
9611 3' -56.2 NC_002577.1 + 138530 0.67 0.895984
Target:  5'- -gUcgCCGACCCG-CGAGGcaggagcGCCUCa -3'
miRNA:   3'- cuGuaGGUUGGGCuGCUCCu------CGGAGg -5'
9611 3' -56.2 NC_002577.1 + 7071 0.67 0.889405
Target:  5'- gGGCG-CCGAgacgUCCGAUGGGGuuccAGCUUCCg -3'
miRNA:   3'- -CUGUaGGUU----GGGCUGCUCC----UCGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 156135 0.67 0.889405
Target:  5'- -uCcgCCGAacccCCCGACGgcgcgcaucAGGGGUCUCCu -3'
miRNA:   3'- cuGuaGGUU----GGGCUGC---------UCCUCGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 126542 0.67 0.889405
Target:  5'- gGGCG-CCGAgacgUCCGAUGGGGuuccAGCUUCCg -3'
miRNA:   3'- -CUGUaGGUU----GGGCUGCUCC----UCGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 141203 0.67 0.889405
Target:  5'- -uCcgCCGAacccCCCGACGgcgcgcaucAGGGGUCUCCu -3'
miRNA:   3'- cuGuaGGUU----GGGCUGC---------UCCUCGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 5541 0.67 0.882605
Target:  5'- uGGCGgguaaUAGCCgGACGAcGGAGUCUCg -3'
miRNA:   3'- -CUGUag---GUUGGgCUGCU-CCUCGGAGg -5'
9611 3' -56.2 NC_002577.1 + 128073 0.67 0.882605
Target:  5'- uGGCGgguaaUAGCCgGACGAcGGAGUCUCg -3'
miRNA:   3'- -CUGUag---GUUGGgCUGCU-CCUCGGAGg -5'
9611 3' -56.2 NC_002577.1 + 157304 0.67 0.878421
Target:  5'- aGCGUCCGACaacGCGAGGAaaaaaccuuagggucGUCUCCg -3'
miRNA:   3'- cUGUAGGUUGggcUGCUCCU---------------CGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 23157 0.67 0.875588
Target:  5'- uAUAUCCcaauuGCCCGGUGAGGA-CCUCUu -3'
miRNA:   3'- cUGUAGGu----UGGGCUGCUCCUcGGAGG- -5'
9611 3' -56.2 NC_002577.1 + 144802 0.67 0.86836
Target:  5'- -uUAUCCGACCUGACauuuGGGAGCUgggugUCUa -3'
miRNA:   3'- cuGUAGGUUGGGCUGc---UCCUCGG-----AGG- -5'
9611 3' -56.2 NC_002577.1 + 156182 0.67 0.86836
Target:  5'- gGACGggcugCCGACCgGGCGucGGGGGCacggCCa -3'
miRNA:   3'- -CUGUa----GGUUGGgCUGC--UCCUCGga--GG- -5'
9611 3' -56.2 NC_002577.1 + 20232 0.67 0.86836
Target:  5'- aACGUCacugcuCAGCCCG-CGuGGAcaauGCCUCCu -3'
miRNA:   3'- cUGUAG------GUUGGGCuGCuCCU----CGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.