Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9616 | 5' | -53 | NC_002577.1 | + | 105962 | 0.66 | 0.98 |
Target: 5'- --aGAGcGGCCGCGCUGgGaa-GGCCg -3' miRNA: 3'- aggUUUaUCGGCGCGGCgUaaaCCGG- -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 151343 | 0.66 | 0.975179 |
Target: 5'- aCCAAGUAcGCgGCGCUGUAacuugaGGCg -3' miRNA: 3'- aGGUUUAU-CGgCGCGGCGUaaa---CCGg -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 84944 | 0.66 | 0.969561 |
Target: 5'- aUCAAucAGuuGCgGCCGCGUaagUGGCg -3' miRNA: 3'- aGGUUuaUCggCG-CGGCGUAa--ACCGg -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 21336 | 0.66 | 0.98 |
Target: 5'- cCCuguUGGCUGCGaauuuCaCAUUUGGCCu -3' miRNA: 3'- aGGuuuAUCGGCGCg----GcGUAAACCGG- -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 66035 | 0.66 | 0.975179 |
Target: 5'- gCCAAAU-GCgGCGCgGCuAUUUGGa- -3' miRNA: 3'- aGGUUUAuCGgCGCGgCG-UAAACCgg -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 97960 | 0.66 | 0.972473 |
Target: 5'- -gCAAuUGGCgGcCGCCGCAgcUGGUa -3' miRNA: 3'- agGUUuAUCGgC-GCGGCGUaaACCGg -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 157879 | 0.66 | 0.969561 |
Target: 5'- cUCGAcugcAGCCgGCGCCGCGgc-GGCUu -3' miRNA: 3'- aGGUUua--UCGG-CGCGGCGUaaaCCGG- -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 160346 | 0.66 | 0.98 |
Target: 5'- gCCGucgAGaacCCGCGuCCGCGUUUGGg- -3' miRNA: 3'- aGGUuuaUC---GGCGC-GGCGUAAACCgg -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 126678 | 0.66 | 0.975179 |
Target: 5'- cCCGuuUGGCCGguggaugaGUCGCGa-UGGCCg -3' miRNA: 3'- aGGUuuAUCGGCg-------CGGCGUaaACCGG- -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 15904 | 0.66 | 0.972473 |
Target: 5'- aCCAGAUAuUCGCGCCaaGUUUGGg- -3' miRNA: 3'- aGGUUUAUcGGCGCGGcgUAAACCgg -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 27970 | 0.66 | 0.966111 |
Target: 5'- -gCGAuuAUGGCCaGUGCCGgAUcugugacgggaguUUGGCCg -3' miRNA: 3'- agGUU--UAUCGG-CGCGGCgUA-------------AACCGG- -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 139458 | 0.66 | 0.969561 |
Target: 5'- cUCGAcugcAGCCgGCGCCGCGgc-GGCUu -3' miRNA: 3'- aGGUUua--UCGG-CGCGGCGUaaaCCGG- -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 15879 | 0.66 | 0.975179 |
Target: 5'- cUCGAGUGGuUCGUGuuGC---UGGCCg -3' miRNA: 3'- aGGUUUAUC-GGCGCggCGuaaACCGG- -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 6936 | 0.66 | 0.975179 |
Target: 5'- cCCGuuUGGCCGguggaugaGUCGCGa-UGGCCg -3' miRNA: 3'- aGGUuuAUCGGCg-------CGGCGUaaACCGG- -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 136992 | 0.66 | 0.98 |
Target: 5'- gCCGucgAGaacCCGCGuCCGCGUUUGGg- -3' miRNA: 3'- aGGUuuaUC---GGCGC-GGCGUAAACCgg -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 135825 | 0.66 | 0.977685 |
Target: 5'- cCCuuGUGGCCGgGC-GCcagaGGCCg -3' miRNA: 3'- aGGuuUAUCGGCgCGgCGuaaaCCGG- -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 161513 | 0.66 | 0.977685 |
Target: 5'- cCCuuGUGGCCGgGC-GCcagaGGCCg -3' miRNA: 3'- aGGuuUAUCGGCgCGgCGuaaaCCGG- -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 80330 | 0.67 | 0.959519 |
Target: 5'- gUCCAAGUucccGCCGCGggcauCCGCGU---GCCu -3' miRNA: 3'- -AGGUUUAu---CGGCGC-----GGCGUAaacCGG- -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 35565 | 0.67 | 0.955716 |
Target: 5'- gCCAGAaAGCCGgGgCGC----GGCCg -3' miRNA: 3'- aGGUUUaUCGGCgCgGCGuaaaCCGG- -5' |
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9616 | 5' | -53 | NC_002577.1 | + | 107532 | 0.67 | 0.96309 |
Target: 5'- uUCUgcggAGCCGUaGCUGCug-UGGCCc -3' miRNA: 3'- -AGGuuuaUCGGCG-CGGCGuaaACCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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