miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9616 5' -53 NC_002577.1 + 128967 0.82 0.295455
Target:  5'- -aCGAGgccgGGCCGCGCUGCAgggaUGGCCg -3'
miRNA:   3'- agGUUUa---UCGGCGCGGCGUaa--ACCGG- -5'
9616 5' -53 NC_002577.1 + 17476 0.67 0.955716
Target:  5'- aCCGAAaacGuCCGCGCUGaauugUGGCCu -3'
miRNA:   3'- aGGUUUau-C-GGCGCGGCguaa-ACCGG- -5'
9616 5' -53 NC_002577.1 + 134052 0.67 0.96309
Target:  5'- uUCCGGGcGGCCuagcgaGCGCCcGCGc--GGCCg -3'
miRNA:   3'- -AGGUUUaUCGG------CGCGG-CGUaaaCCGG- -5'
9616 5' -53 NC_002577.1 + 160346 0.66 0.98
Target:  5'- gCCGucgAGaacCCGCGuCCGCGUUUGGg- -3'
miRNA:   3'- aGGUuuaUC---GGCGC-GGCGUAAACCgg -5'
9616 5' -53 NC_002577.1 + 158844 0.73 0.694927
Target:  5'- gCCAGA-GGCCGCgGCCGC----GGCCg -3'
miRNA:   3'- aGGUUUaUCGGCG-CGGCGuaaaCCGG- -5'
9616 5' -53 NC_002577.1 + 160779 0.73 0.725486
Target:  5'- gUCCGAGggaguGuuGUGCCGCAc--GGCCg -3'
miRNA:   3'- -AGGUUUau---CggCGCGGCGUaaaCCGG- -5'
9616 5' -53 NC_002577.1 + 138282 0.72 0.755292
Target:  5'- gCCGGccgcGGCCGCGCCGUccuccgcGGCCg -3'
miRNA:   3'- aGGUUua--UCGGCGCGGCGuaaa---CCGG- -5'
9616 5' -53 NC_002577.1 + 40302 0.7 0.876899
Target:  5'- gUCUAGAUAGCguCGCGUCGCcgUUaaugcgaggGGCUa -3'
miRNA:   3'- -AGGUUUAUCG--GCGCGGCGuaAA---------CCGG- -5'
9616 5' -53 NC_002577.1 + 132414 0.69 0.897817
Target:  5'- uUCCAAAaAGCCgGUGUgGCGgacucGGCCa -3'
miRNA:   3'- -AGGUUUaUCGG-CGCGgCGUaaa--CCGG- -5'
9616 5' -53 NC_002577.1 + 163201 0.67 0.955716
Target:  5'- cCUAGcgAGCaugCGCGCgGCGgacccUGGCCa -3'
miRNA:   3'- aGGUUuaUCG---GCGCGgCGUaa---ACCGG- -5'
9616 5' -53 NC_002577.1 + 86217 0.68 0.933104
Target:  5'- gCCAAuGUAcGgCGCGCCGUAaucccUGGCCc -3'
miRNA:   3'- aGGUU-UAU-CgGCGCGGCGUaa---ACCGG- -5'
9616 5' -53 NC_002577.1 + 111659 0.7 0.884105
Target:  5'- -aCGGAUGGCCGCGC-GCAc--GGUCu -3'
miRNA:   3'- agGUUUAUCGGCGCGgCGUaaaCCGG- -5'
9616 5' -53 NC_002577.1 + 73036 0.8 0.37198
Target:  5'- gUCCAGcu-GCCGUGUCGCA-UUGGCCc -3'
miRNA:   3'- -AGGUUuauCGGCGCGGCGUaAACCGG- -5'
9616 5' -53 NC_002577.1 + 71588 0.68 0.933104
Target:  5'- cUCCGc-UAGCCGUGCaCGUAg--GGCa -3'
miRNA:   3'- -AGGUuuAUCGGCGCG-GCGUaaaCCGg -5'
9616 5' -53 NC_002577.1 + 74063 0.74 0.674264
Target:  5'- aUCCGAcAUGGUCGUGCCGgAgcUGGCa -3'
miRNA:   3'- -AGGUU-UAUCGGCGCGGCgUaaACCGg -5'
9616 5' -53 NC_002577.1 + 26998 0.7 0.884105
Target:  5'- cUCCGAAUAGCUGcCGaCgGCcUUucugaUGGCCg -3'
miRNA:   3'- -AGGUUUAUCGGC-GC-GgCGuAA-----ACCGG- -5'
9616 5' -53 NC_002577.1 + 65953 0.68 0.942882
Target:  5'- uUCCGAcgGGCUG-GCCGaug-UGGCUu -3'
miRNA:   3'- -AGGUUuaUCGGCgCGGCguaaACCGG- -5'
9616 5' -53 NC_002577.1 + 80330 0.67 0.959519
Target:  5'- gUCCAAGUucccGCCGCGggcauCCGCGU---GCCu -3'
miRNA:   3'- -AGGUUUAu---CGGCGC-----GGCGUAaacCGG- -5'
9616 5' -53 NC_002577.1 + 139063 0.74 0.684618
Target:  5'- aCCucgaAGCCGgGCCGCAcgucggGGCCg -3'
miRNA:   3'- aGGuuuaUCGGCgCGGCGUaaa---CCGG- -5'
9616 5' -53 NC_002577.1 + 10107 0.73 0.725486
Target:  5'- cUCCGAGgccGGCuCGCGCCGagcc-GGCCa -3'
miRNA:   3'- -AGGUUUa--UCG-GCGCGGCguaaaCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.