miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9616 5' -53 NC_002577.1 + 1200 0.69 0.897817
Target:  5'- uUCCAAAaAGCCgGUGUgGCGgacucGGCCa -3'
miRNA:   3'- -AGGUUUaUCGG-CGCGgCGUaaa--CCGG- -5'
9616 5' -53 NC_002577.1 + 4646 0.82 0.295455
Target:  5'- -aCGAGgccgGGCCGCGCUGCAgggaUGGCCg -3'
miRNA:   3'- agGUUUa---UCGGCGCGGCGUaa--ACCGG- -5'
9616 5' -53 NC_002577.1 + 6696 0.68 0.927842
Target:  5'- aUCgCAAAUAGCC-CGCaaaagaaggauCGCAUUUccGGCCc -3'
miRNA:   3'- -AG-GUUUAUCGGcGCG-----------GCGUAAA--CCGG- -5'
9616 5' -53 NC_002577.1 + 6936 0.66 0.975179
Target:  5'- cCCGuuUGGCCGguggaugaGUCGCGa-UGGCCg -3'
miRNA:   3'- aGGUuuAUCGGCg-------CGGCGUaaACCGG- -5'
9616 5' -53 NC_002577.1 + 10107 0.73 0.725486
Target:  5'- cUCCGAGgccGGCuCGCGCCGagcc-GGCCa -3'
miRNA:   3'- -AGGUUUa--UCG-GCGCGGCguaaaCCGG- -5'
9616 5' -53 NC_002577.1 + 15879 0.66 0.975179
Target:  5'- cUCGAGUGGuUCGUGuuGC---UGGCCg -3'
miRNA:   3'- aGGUUUAUC-GGCGCggCGuaaACCGG- -5'
9616 5' -53 NC_002577.1 + 15904 0.66 0.972473
Target:  5'- aCCAGAUAuUCGCGCCaaGUUUGGg- -3'
miRNA:   3'- aGGUUUAUcGGCGCGGcgUAAACCgg -5'
9616 5' -53 NC_002577.1 + 16683 0.72 0.793404
Target:  5'- gUUC-AGUAGUCGCGCUGCGcaaUGGUCg -3'
miRNA:   3'- -AGGuUUAUCGGCGCGGCGUaa-ACCGG- -5'
9616 5' -53 NC_002577.1 + 17476 0.67 0.955716
Target:  5'- aCCGAAaacGuCCGCGCUGaauugUGGCCu -3'
miRNA:   3'- aGGUUUau-C-GGCGCGGCguaa-ACCGG- -5'
9616 5' -53 NC_002577.1 + 20013 0.72 0.797091
Target:  5'- gCCGAAUAccauGCCGCGCCGCucuccuuucuGCCc -3'
miRNA:   3'- aGGUUUAU----CGGCGCGGCGuaaac-----CGG- -5'
9616 5' -53 NC_002577.1 + 21336 0.66 0.98
Target:  5'- cCCuguUGGCUGCGaauuuCaCAUUUGGCCu -3'
miRNA:   3'- aGGuuuAUCGGCGCg----GcGUAAACCGG- -5'
9616 5' -53 NC_002577.1 + 26998 0.7 0.884105
Target:  5'- cUCCGAAUAGCUGcCGaCgGCcUUucugaUGGCCg -3'
miRNA:   3'- -AGGUUUAUCGGC-GC-GgCGuAA-----ACCGG- -5'
9616 5' -53 NC_002577.1 + 27970 0.66 0.966111
Target:  5'- -gCGAuuAUGGCCaGUGCCGgAUcugugacgggaguUUGGCCg -3'
miRNA:   3'- agGUU--UAUCGG-CGCGGCgUA-------------AACCGG- -5'
9616 5' -53 NC_002577.1 + 35565 0.67 0.955716
Target:  5'- gCCAGAaAGCCGgGgCGC----GGCCg -3'
miRNA:   3'- aGGUUUaUCGGCgCgGCGuaaaCCGG- -5'
9616 5' -53 NC_002577.1 + 40302 0.7 0.876899
Target:  5'- gUCUAGAUAGCguCGCGUCGCcgUUaaugcgaggGGCUa -3'
miRNA:   3'- -AGGUUUAUCG--GCGCGGCGuaAA---------CCGG- -5'
9616 5' -53 NC_002577.1 + 65953 0.68 0.942882
Target:  5'- uUCCGAcgGGCUG-GCCGaug-UGGCUu -3'
miRNA:   3'- -AGGUUuaUCGGCgCGGCguaaACCGG- -5'
9616 5' -53 NC_002577.1 + 66035 0.66 0.975179
Target:  5'- gCCAAAU-GCgGCGCgGCuAUUUGGa- -3'
miRNA:   3'- aGGUUUAuCGgCGCGgCG-UAAACCgg -5'
9616 5' -53 NC_002577.1 + 66224 1.13 0.003229
Target:  5'- uUCCAAAUAGCCGCGCCGCAUUUGGCCu -3'
miRNA:   3'- -AGGUUUAUCGGCGCGGCGUAAACCGG- -5'
9616 5' -53 NC_002577.1 + 71588 0.68 0.933104
Target:  5'- cUCCGc-UAGCCGUGCaCGUAg--GGCa -3'
miRNA:   3'- -AGGUuuAUCGGCGCG-GCGUaaaCCGg -5'
9616 5' -53 NC_002577.1 + 73036 0.8 0.37198
Target:  5'- gUCCAGcu-GCCGUGUCGCA-UUGGCCc -3'
miRNA:   3'- -AGGUUuauCGGCGCGGCGUaAACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.