miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9616 5' -53 NC_002577.1 + 66224 1.13 0.003229
Target:  5'- uUCCAAAUAGCCGCGCCGCAUUUGGCCu -3'
miRNA:   3'- -AGGUUUAUCGGCGCGGCGUAAACCGG- -5'
9616 5' -53 NC_002577.1 + 4646 0.82 0.295455
Target:  5'- -aCGAGgccgGGCCGCGCUGCAgggaUGGCCg -3'
miRNA:   3'- agGUUUa---UCGGCGCGGCGUaa--ACCGG- -5'
9616 5' -53 NC_002577.1 + 128967 0.82 0.295455
Target:  5'- -aCGAGgccgGGCCGCGCUGCAgggaUGGCCg -3'
miRNA:   3'- agGUUUa---UCGGCGCGGCGUaa--ACCGG- -5'
9616 5' -53 NC_002577.1 + 73036 0.8 0.37198
Target:  5'- gUCCAGcu-GCCGUGUCGCA-UUGGCCc -3'
miRNA:   3'- -AGGUUuauCGGCGCGGCGUaAACCGG- -5'
9616 5' -53 NC_002577.1 + 74063 0.74 0.674264
Target:  5'- aUCCGAcAUGGUCGUGCCGgAgcUGGCa -3'
miRNA:   3'- -AGGUU-UAUCGGCGCGGCgUaaACCGg -5'
9616 5' -53 NC_002577.1 + 158275 0.74 0.684618
Target:  5'- aCCucgaAGCCGgGCCGCAcgucggGGCCg -3'
miRNA:   3'- aGGuuuaUCGGCgCGGCGUaaa---CCGG- -5'
9616 5' -53 NC_002577.1 + 139063 0.74 0.684618
Target:  5'- aCCucgaAGCCGgGCCGCAcgucggGGCCg -3'
miRNA:   3'- aGGuuuaUCGGCgCGGCGUaaa---CCGG- -5'
9616 5' -53 NC_002577.1 + 138493 0.73 0.694927
Target:  5'- gCCAGA-GGCCGCgGCCGC----GGCCg -3'
miRNA:   3'- aGGUUUaUCGGCG-CGGCGuaaaCCGG- -5'
9616 5' -53 NC_002577.1 + 158844 0.73 0.694927
Target:  5'- gCCAGA-GGCCGCgGCCGC----GGCCg -3'
miRNA:   3'- aGGUUUaUCGGCG-CGGCGuaaaCCGG- -5'
9616 5' -53 NC_002577.1 + 160779 0.73 0.725486
Target:  5'- gUCCGAGggaguGuuGUGCCGCAc--GGCCg -3'
miRNA:   3'- -AGGUUUau---CggCGCGGCGUaaaCCGG- -5'
9616 5' -53 NC_002577.1 + 10107 0.73 0.725486
Target:  5'- cUCCGAGgccGGCuCGCGCCGagcc-GGCCa -3'
miRNA:   3'- -AGGUUUa--UCG-GCGCGGCguaaaCCGG- -5'
9616 5' -53 NC_002577.1 + 136558 0.73 0.725486
Target:  5'- gUCCGAGggaguGuuGUGCCGCAc--GGCCg -3'
miRNA:   3'- -AGGUUUau---CggCGCGGCGUaaaCCGG- -5'
9616 5' -53 NC_002577.1 + 123506 0.73 0.725486
Target:  5'- cUCCGAGgccGGCuCGCGCCGagcc-GGCCa -3'
miRNA:   3'- -AGGUUUa--UCG-GCGCGGCguaaaCCGG- -5'
9616 5' -53 NC_002577.1 + 159056 0.72 0.755292
Target:  5'- gCCGGccgcGGCCGCGCCGUccuccgcGGCCg -3'
miRNA:   3'- aGGUUua--UCGGCGCGGCGuaaa---CCGG- -5'
9616 5' -53 NC_002577.1 + 138282 0.72 0.755292
Target:  5'- gCCGGccgcGGCCGCGCCGUccuccgcGGCCg -3'
miRNA:   3'- aGGUUua--UCGGCGCGGCGuaaa---CCGG- -5'
9616 5' -53 NC_002577.1 + 16683 0.72 0.793404
Target:  5'- gUUC-AGUAGUCGCGCUGCGcaaUGGUCg -3'
miRNA:   3'- -AGGuUUAUCGGCGCGGCGUaa-ACCGG- -5'
9616 5' -53 NC_002577.1 + 20013 0.72 0.797091
Target:  5'- gCCGAAUAccauGCCGCGCCGCucuccuuucuGCCc -3'
miRNA:   3'- aGGUUUAU----CGGCGCGGCGuaaac-----CGG- -5'
9616 5' -53 NC_002577.1 + 101314 0.7 0.845856
Target:  5'- cCCAAA-AGCCGUGCgcaaGCAUcgUGGCg -3'
miRNA:   3'- aGGUUUaUCGGCGCGg---CGUAa-ACCGg -5'
9616 5' -53 NC_002577.1 + 40302 0.7 0.876899
Target:  5'- gUCUAGAUAGCguCGCGUCGCcgUUaaugcgaggGGCUa -3'
miRNA:   3'- -AGGUUUAUCG--GCGCGGCGuaAA---------CCGG- -5'
9616 5' -53 NC_002577.1 + 26998 0.7 0.884105
Target:  5'- cUCCGAAUAGCUGcCGaCgGCcUUucugaUGGCCg -3'
miRNA:   3'- -AGGUUUAUCGGC-GC-GgCGuAA-----ACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.