miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9624 5' -53.9 NC_002577.1 + 163399 0.69 0.837225
Target:  5'- uGGugGCCAGgguCcGCCGcgCGCAuGCUCg -3'
miRNA:   3'- -UCugCGGUUau-GuCGGUa-GCGU-CGAG- -5'
9624 5' -53.9 NC_002577.1 + 163232 0.67 0.927926
Target:  5'- cGGCGggGAUGCAGCg--UGCGGCUCg -3'
miRNA:   3'- uCUGCggUUAUGUCGguaGCGUCGAG- -5'
9624 5' -53.9 NC_002577.1 + 161094 0.68 0.876756
Target:  5'- cGGGCGCCGGUAC-GCaaaacaGguGCUCg -3'
miRNA:   3'- -UCUGCGGUUAUGuCGguag--CguCGAG- -5'
9624 5' -53.9 NC_002577.1 + 160774 0.66 0.951834
Target:  5'- gGGGgGCCGGcAUAGCCAgcaaUCGgAGUUCc -3'
miRNA:   3'- -UCUgCGGUUaUGUCGGU----AGCgUCGAG- -5'
9624 5' -53.9 NC_002577.1 + 160321 0.67 0.922395
Target:  5'- -cGCGCCAcgcguUGCAGCCGUCG-GGCc- -3'
miRNA:   3'- ucUGCGGUu----AUGUCGGUAGCgUCGag -5'
9624 5' -53.9 NC_002577.1 + 159955 0.66 0.938235
Target:  5'- gGGGCGCCGGg--AGCgAacucUCGCGGCUa -3'
miRNA:   3'- -UCUGCGGUUaugUCGgU----AGCGUCGAg -5'
9624 5' -53.9 NC_002577.1 + 156167 0.66 0.95588
Target:  5'- cGGGCGUCGGgggcACGGCCAcgcUCGguGUauUCa -3'
miRNA:   3'- -UCUGCGGUUa---UGUCGGU---AGCguCG--AG- -5'
9624 5' -53.9 NC_002577.1 + 155794 0.67 0.922395
Target:  5'- cGGAuCGCCAGUGCuGCCGgcgUCGCcacGGUUg -3'
miRNA:   3'- -UCU-GCGGUUAUGuCGGU---AGCG---UCGAg -5'
9624 5' -53.9 NC_002577.1 + 154750 0.69 0.85766
Target:  5'- uGGACGCCGGUGCguuaggggcaaguagGGCCGgcccccccucccccaCGCAGCg- -3'
miRNA:   3'- -UCUGCGGUUAUG---------------UCGGUa--------------GCGUCGag -5'
9624 5' -53.9 NC_002577.1 + 152981 0.69 0.837225
Target:  5'- uGGugGCC---GCGGCCGUCGUaacuacgguaAGCUUu -3'
miRNA:   3'- -UCugCGGuuaUGUCGGUAGCG----------UCGAG- -5'
9624 5' -53.9 NC_002577.1 + 152907 0.68 0.88471
Target:  5'- aAGAC-CCGGaGCGGCCAUCGagaaagaaucagguaGGCUCc -3'
miRNA:   3'- -UCUGcGGUUaUGUCGGUAGCg--------------UCGAG- -5'
9624 5' -53.9 NC_002577.1 + 152738 0.66 0.947547
Target:  5'- gGGACGCgGgucuGUAC-GUCGUCGUcGCUCu -3'
miRNA:   3'- -UCUGCGgU----UAUGuCGGUAGCGuCGAG- -5'
9624 5' -53.9 NC_002577.1 + 142586 0.69 0.85766
Target:  5'- uGGACGCCGGUGCguuaggggcaaguagGGCCGgcccccccucccccaCGCAGCg- -3'
miRNA:   3'- -UCUGCGGUUAUG---------------UCGGUa--------------GCGUCGag -5'
9624 5' -53.9 NC_002577.1 + 141543 0.67 0.922395
Target:  5'- cGGAuCGCCAGUGCuGCCGgcgUCGCcacGGUUg -3'
miRNA:   3'- -UCU-GCGGUUAUGuCGGU---AGCG---UCGAg -5'
9624 5' -53.9 NC_002577.1 + 141171 0.66 0.95588
Target:  5'- cGGGCGUCGGgggcACGGCCAcgcUCGguGUauUCa -3'
miRNA:   3'- -UCUGCGGUUa---UGUCGGU---AGCguCG--AG- -5'
9624 5' -53.9 NC_002577.1 + 137382 0.68 0.891006
Target:  5'- gGGGCGCCAGg--AGCgAacucUCGCGGCUa -3'
miRNA:   3'- -UCUGCGGUUaugUCGgU----AGCGUCGAg -5'
9624 5' -53.9 NC_002577.1 + 137016 0.67 0.922395
Target:  5'- -cGCGCCAcgcguUGCAGCCGUCG-GGCc- -3'
miRNA:   3'- ucUGCGGUu----AUGUCGGUAGCgUCGag -5'
9624 5' -53.9 NC_002577.1 + 136564 0.66 0.951834
Target:  5'- gGGGgGCCGGcAUAGCCAgcaaUCGgAGUUCc -3'
miRNA:   3'- -UCUgCGGUUaUGUCGGU----AGCgUCGAG- -5'
9624 5' -53.9 NC_002577.1 + 136244 0.68 0.876756
Target:  5'- cGGGCGCCGGUAC-GCaaaacaGguGCUCg -3'
miRNA:   3'- -UCUGCGGUUAUGuCGguag--CguCGAG- -5'
9624 5' -53.9 NC_002577.1 + 134096 0.67 0.927926
Target:  5'- cGGCGggGAUGCAGCg--UGCGGCUCg -3'
miRNA:   3'- uCUGCggUUAUGUCGguaGCGUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.